Annotation of co-expression genes

PH01000365G0310's details annotation

1.Annotation

ICBR annotation: ras-related protein, putative, expressed

Blast result AT1G09630 : 1.00E-91
Blast annotation: RAB GTPase 11C

2.Location

Scaffold: PH01000365
Strand: -

RegionStartEnd
gene233070236790
mRNA233070236790
exon233070233647
exon236099236790
CDS233159233647
CDS236099236287

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001858RLK-Pelle_RLCK-V (from iTAK)
katanin_complex
Endocytosis
microtubule_severing

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00071.21Ras22182

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
EndocytosisRas-related protein Rab-11Ako04144K07904

10.Gene Ontology

GO AccessionGO Annotation
GO:0003924GTPase activity
GO:0005525GTP binding
GO:0005622intracellular
GO:0006184GTP catabolic process
GO:0006886intracellular protein transport
GO:0006913nucleocytoplasmic transport
GO:0007165signal transduction
GO:0007264small GTPase mediated signal transduction
GO:0015031protein transport
GO:0016020membrane

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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