PH01000540G0640's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT3G14910 : 8.20E-78
Blast annotation: -
2.Location
Scaffold: PH01000540
Strand: -
| Region | Start | End |
| gene | 446332 | 452188 |
| mRNA | 446332 | 452188 |
| exon | 446332 | 447395 |
| exon | 447549 | 447697 |
| exon | 447775 | 447932 |
| exon | 448327 | 448388 |
| exon | 448651 | 448767 |
| exon | 450852 | 450986 |
| exon | 451676 | 452188 |
| CDS | 447294 | 447395 |
| CDS | 447549 | 447697 |
| CDS | 447775 | 447932 |
| CDS | 448327 | 448388 |
| CDS | 448651 | 448767 |
| CDS | 450852 | 450986 |
| CDS | 451676 | 452053 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF14655.5 | RAB3GAP2_N | 32 | 333 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0043087 | regulation of GTPase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.