Annotation of co-expression genes

PH01000810G0670's details annotation

1.Annotation

ICBR annotation: phosphatidylinositol 3- and 4-kinase family protein, putative, expressed

Blast result AT2G03890 : 0
Blast annotation: phosphoinositide 4-kinase gamma 7

2.Location

Scaffold: PH01000810
Strand: -

RegionStartEnd
gene396993408574
mRNA396993408574
exon396993408574
CDS397535399202

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001290Protein_processing_in_endoplasmic_reticulum
AGC_NDR (from iTAK)
coexpression networkCFinderM001309Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
cysteine biosynthetic process from serine,
aromatic amino acid family biosynthetic process,
Sulfur_metabolism
serine O-acetyltransferase activity,
3-deoxy-7-phosphoheptulonate synthase activity,
Cysteine_and_methionine_metabolism
coexpression networkCFinderM001420heat shock protein binding,
Protein_processing_in_endoplasmic_reticulum
unfolded protein binding,
CAMK_CDPK (from iTAK)
response to heat,
protein folding,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00454.26PI3_PI4_kinase179433

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0016773phosphotransferase activity, alcohol group as acceptor

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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