Annotation of co-expression genes

PH01001197G0140's details annotation

1.Annotation

ICBR annotation: glutathione reductase, putative, expressed

Blast result AT3G54660 : 0.00E+00
Blast annotation: glutathione reductase

2.Location

Scaffold: PH01001197
Strand: +

RegionStartEnd
gene123192129452
mRNA123192129452
exon123192123678
exon124598124823
exon124922125200
exon125284125460
exon125565125618
exon125729125877
exon127120127183
exon127257127427
exon127508127621
exon127791127817
exon128759129452
CDS123272123678
CDS124598124823
CDS124922125200
CDS125284125460
CDS125565125618
CDS125729125877
CDS127120127183
CDS127257127427
CDS127508127621
CDS127791127817
CDS128759128881

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF07992.13Pyr_redox_290413
PF02852.21Pyr_redox_dim433541

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Glutathione metabolismglutathione reductase (NADPH) [EC:1.8.1.7]ko00480K00383

10.Gene Ontology

GO AccessionGO Annotation
GO:0005737cytoplasm
GO:0016491oxidoreductase activity
GO:0016668oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor
GO:0045454cell redox homeostasis
GO:0050660flavin adenine dinucleotide binding
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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