Annotation of co-expression genes

PH01001424G0190's details annotation

1.Annotation

ICBR annotation: pentatricopeptide repeat domain containing protein, putative, expressed

Blast result AT2G22070 : 6.00E-143
Blast annotation: pentatricopeptide (PPR) repeat-containing protein

2.Location

Scaffold: PH01001424
Strand: -

RegionStartEnd
gene127684131006
mRNA127684131006
exon127684131006
CDS128259130424

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001456Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
L-phenylalanine biosynthetic process,
microtubule associated complex,
microtubule-based movement,
prephenate dehydratase activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01535.19PPR79107
PF13812.5PPR_3139189
PF13041.5PPR_2209250
PF01535.19PPR284305
PF01535.19PPR316345
PF01535.19PPR389411
PF13041.5PPR_2413461
PF01535.19PPR488509
PF14432.5DYW_deaminase587711

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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