PH01003431G0170's details annotation
1.Annotation
ICBR annotation: DUF630/DUF632 domains containing protein, putative, expressed
Blast result AT4G35240 : 2.30E-69
Blast annotation: Protein of unknown function (DUF630 and DUF632)
2.Location
Scaffold: PH01003431
Strand: +
| Region | Start | End |
| gene | 98433 | 105475 |
| mRNA | 98433 | 105475 |
| exon | 98433 | 99503 |
| exon | 102305 | 102528 |
| exon | 103724 | 105475 |
| CDS | 99207 | 99503 |
| CDS | 102305 | 102528 |
| CDS | 103724 | 104432 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000694 | IWS1 Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM001004 | IWS1 Transcription_Regulator(from iTAK) heme_a_biosynthetic_process threonyl-tRNA aminoacylation, tRNA aminoacylation, threonine-tRNA ligase activity, Aminoacyl-tRNA_biosynthesis Porphyrin_and_chlorophyll_metabolism ligase activity, forming aminoacyl-tRNA and related compounds, oxidoreductase activity, acting on the CH-CH group of donors, Oxidative_phosphorylation nucleotide binding, tRNA aminoacylation for protein translation, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04783.11 | DUF630 | 1 | 59 |
| PF04782.11 | DUF632 | 100 | 306 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.