CFinderM000074's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     

Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
Ribosome2.38E-06KEGG
translation,0.000128984GO:0006412
structural constituent of ribosome,0.000224495GO:0003735
intracellular,0.010753412GO:0005622

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000002G1570-AT4G22190 (1.80E-09)
PH01000007G1750ARM repeat superfamily proteinAT5G65920 (1.00E-133)
PH01000010G2470Methyltransferase MT-A70 family proteinAT4G09980 (4.00E-174)
PH01000045G0750-- (-)
PH01000053G1530Ribosomal protein S5 domain 2-like superfamily proteinAT2G09990 (1.20E-61)
PH01000077G1210Ribosomal protein S5 domain 2-like superfamily proteinAT2G09990 (2.20E-60)
PH01000198G0780ARM repeat superfamily proteinAT1G61350 (3.00E-112)
PH01000362G0280ARM repeat superfamily proteinAT2G45720 (2.00E-143)
PH01000399G0720polygalacturonase 2AT1G70370 (4.00E-170)
PH01000470G0700vacuolar protein sorting 45AT1G77140 (0.00E+00)
PH01000606G0020Ribosomal protein L13 family proteinAT5G48760 (2.00E-101)
PH01000642G0230Leucine-rich repeat protein kinase family proteinAT1G10850 (3.00E-41)
PH01000667G0600HAESA-like 1AT1G28440 (0.00E+00)
PH01000937G0190-- (-)
PH01000953G0540-- (-)
PH01000985G0260GATA transcription factor 15AT3G06740 (5.50E-22)
PH01000990G0440Ribosomal protein S24e family proteinAT3G04920 (7.70E-56)
PH01001048G0540Brassinosteroid signalling positive regulator (BZR1) family proteinAT1G19350 (7.20E-42)
PH01001125G0580-- (-)
PH01001150G0090-AT3G54000 (4.80E-11)
PH01001528G0240expansin A4AT2G39700 (1.00E-125)
PH01001616G0240-- (-)
PH01001996G0050Ribosomal protein L35Ae family proteinAT1G74270 (3.10E-52)
PH01002351G0200ubiquitin-specific protease 5AT2G40930 (0.00E+00)
PH01002755G0080-- (-)
PH01002850G0200histone H2A protein 9AT1G52740 (6.40E-54)
PH01003181G0130ARM repeat superfamily proteinAT1G61350 (3.00E-110)
PH01003370G0180-- (-)
PH01003506G0060Plant invertase/pectin methylesterase inhibitor superfamilyAT2G43050 (1.00E-119)
PH01003559G0130Ribosomal L27e protein familyAT3G22230 (3.80E-58)
PH01004108G0110-- (-)
PH01005035G0020mago nashi family proteinAT1G02140 (1.20E-61)
PH01005277G0030beta-xylosidase 2AT1G02640 (5.00E-162)
PH01167393G0010Phosphate-responsive 1 family proteinAT4G08950 (2.50E-63)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000005lipid transport,
AP2/ERF-ERF Transcription_Regulator(from iTAK)
ERF Transcription_Regulator(from PlantTFDB)
lipid binding,
ubiquitin thiolesterase activity,
details
CFinderM000007methylation,
nucleobase-containing compound metabolic process,
details
CFinderM000009ubiquitin thiolesterase activity,
Oxidative_phosphorylation
ubiquitin-dependent protein catabolic process,
details
CFinderM000015hexose_metabolic_process
extracellular region,
Glycolysis_/_Gluconeogenesis
details
CFinderM000021AGC_RSK-2 (from iTAK)
Pentose_and_glucuronate_interconversions
Retinol_metabolism
Drug_metabolism_-_other_enzymes
Metabolism_of_xenobiotics_by_cytochrome_P450
Ascorbate_and_aldarate_metabolism
Steroid_hormone_biosynthesis
Drug_metabolism_-_cytochrome_P450
Porphyrin_and_chlorophyll_metabolism
details
CFinderM000022basal lamina,
G-protein coupled acetylcholine receptor signaling pathway
receptor clustering,
Ribosome
laminin binding
translation,
intracellular,
structural constituent of ribosome,
details
CFinderM000023Endocytosis
vesicle docking involved in exocytosis,
RLK-Pelle_LRR-XI-1 (from iTAK)
WRKY Transcription_Regulator(from PlantTFDB)
details
CFinderM000027Butanoate_metabolism
Citrate_cycle_(TCA_cycle)
Pyruvate_metabolism
Glycolysis_/_Gluconeogenesis
intracellular membrane-bounded organelle,
pyruvate dehydrogenase (acetyl-transferring) activity,
oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor,
vesicle docking involved in exocytosis,
Endocytosis
details
CFinderM000041Oxidative_phosphorylation
respiratory electron transport chain,
mitochondrial inner membrane,
details
CFinderM000045RLK-Pelle_LRR-VII-1 (from iTAK)
details
CFinderM000049vesicle docking involved in exocytosis,
Endocytosis
ubiquitin thiolesterase activity,
details
CFinderM000067GT57 GlycosylTransferases
mitochondrial_respiratory_chain_complex_III
endoplasmic reticulum membrane,
methylation,
mitochondrial electron transport, ubiquinol to cytochrome c,
N-Glycan_biosynthesis
Oxidative_phosphorylation
nucleobase-containing compound metabolic process,
details
CFinderM000068cellular protein modification process,
ubiquitin-protein ligase activity,
Ubiquitin_mediated_proteolysis
binding,
intracellular,
protein binding,
CE8 Carbohydrate_Esterases
GH28 Glycoside_Hydrolases
Alfin-like Transcription_Regulator(from iTAK)
SWI/SNF-SWI3 Transcription_Regulator(from iTAK)
TORC1_complex
details
CFinderM000071Endocytosis
vesicle docking involved in exocytosis,
details
CFinderM000073BES1 Transcription_Regulator(from PlantTFDB)
large ribosomal subunit,
C2C2-GATA Transcription_Regulator(from iTAK)
GATA Transcription_Regulator(from PlantTFDB)
details
CFinderM000089RLK-Pelle_LRR-VII-1 (from iTAK)
RLK-Pelle_LRR-XI-1 (from iTAK)
protein phosphorylation,
protein kinase activity,
transferase activity, transferring phosphorus-containing groups,
ATP binding,
vesicle docking involved in exocytosis,
Endocytosis
vesicle-mediated transport,
protein serine/threonine kinase activity,
protein binding,
details
CFinderM000096NF-X1 Transcription_Regulator(from PlantTFDB)
RLK-Pelle_LRR-Xa (from iTAK)
Endocytosis
GATA Transcription_Regulator(from PlantTFDB)
C2C2-GATA Transcription_Regulator(from iTAK)
GRAS Transcription_Regulator(from PlantTFDB)
vesicle docking involved in exocytosis,
details
CFinderM000106PL1 Polysaccharide_Lyases
NF-YC Transcription_Regulator(from PlantTFDB)
ribonucleoprotein complex,
nucleolus,
cellulose biosynthetic process,
ribosome biogenesis,
details
CFinderM000132ubiquitin-dependent protein catabolic process,
phospholipid binding,
ubiquitin thiolesterase activity,
details
CFinderM000134mediator complex,
methylation,
regulation of transcription from RNA polymerase II promoter,
details
CFinderM000135RLK-Pelle_CrRLK1L-1 (from iTAK)
SWI/SNF-BAF60b Transcription_Regulator(from iTAK)
details
CFinderM000138RLK-Pelle_LRR-Xa (from iTAK)
GRAS Transcription_Regulator(from PlantTFDB)
vesicle docking involved in exocytosis,
details
CFinderM000141Other_glycan_degradation
alpha-L-fucosidase activity,
vesicle docking involved in exocytosis,
carbohydrate metabolic process,
Endocytosis
details
CFinderM000142ZF-HD Transcription_Regulator(from PlantTFDB)
methylation,
nucleobase-containing compound metabolic process,
ubiquitin-dependent protein catabolic process,
details
CFinderM000147mitochondrial inner membrane presequence translocase complex,
P-P-bond-hydrolysis-driven protein transmembrane transporter activity,
GRAS Transcription_Regulator(from PlantTFDB)
Endocytosis
vesicle docking involved in exocytosis,
details
CFinderM000156cellular component organization,
actin cytoskeleton organization,
actin binding,
extracellular region,
RNA-dependent DNA replication,
details
CFinderM000165oxidoreductase activity, acting on CH-OH group of donors,
flavin adenine dinucleotide binding,
oxidation-reduction process,
vesicle docking involved in exocytosis,
Valine,_leucine_and_isoleucine_degradation
oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor,
Histidine_metabolism
Limonene_and_pinene_degradation
Propanoate_metabolism
Tryptophan_metabolism
Lysine_degradation
Chloroalkane_and_chloroalkene_degradation
beta-Alanine_metabolism
Fatty_acid_metabolism
Glycerolipid_metabolism
Ascorbate_and_aldarate_metabolism
Pentose_and_glucuronate_interconversions
details
CFinderM000166Ribosome
translation,
Ribosome
structural constituent of ribosome,
intracellular,
mitochondrial envelope,
cytochrome-c oxidase activity,
polysaccharide_binding
ubiquitin thiolesterase activity,
Oxidative_phosphorylation
ubiquitin-dependent protein catabolic process,
details
CFinderM000167riboflavin synthase activity,
Riboflavin_metabolism
vesicle docking involved in exocytosis,
riboflavin biosynthetic process,
details
CFinderM000198arginine decarboxylase activity,
vesicle docking involved in exocytosis,
spermidine biosynthetic process,
arginine catabolic process,
Endocytosis
RNA_degradation
details
CFinderM000208Endocytosis
vesicle docking involved in exocytosis,
GATA Transcription_Regulator(from PlantTFDB)
TALE Transcription_Regulator(from PlantTFDB)
HB-BELL Transcription_Regulator(from iTAK)
C2C2-GATA Transcription_Regulator(from iTAK)
RLK-Pelle_L-LEC (from iTAK)
GRAS Transcription_Regulator(from PlantTFDB)
details
CFinderM000211PL1 Polysaccharide_Lyases
RLK-Pelle_LRR-XI-1 (from iTAK)
RLK-Pelle_LRR-III (from iTAK)
ubiquitin-dependent protein catabolic process,
protein phosphorylation,
details
CFinderM000223details
CFinderM000241signal peptidase complex,
Protein_export
signal peptide processing,
details
CFinderM000276C2C2-Dof Transcription_Regulator(from iTAK)
Dof Transcription_Regulator(from PlantTFDB)
Endocytosis
RLK-Pelle_LRR-III (from iTAK)
vesicle docking involved in exocytosis,
details
CFinderM000280BES1 Transcription_Regulator(from PlantTFDB)
ubiquitin-dependent protein catabolic process,
ubiquitin thiolesterase activity,
details
CFinderM000292Basal_transcription_factors
nucleus,
HSF Transcription_Regulator(from PlantTFDB)
vesicle docking involved in exocytosis,
Endocytosis
details
CFinderM000301HSF Transcription_Regulator(from PlantTFDB)
large ribosomal subunit,
RLK-Pelle_LRR-III (from iTAK)
Spliceosome
details
CFinderM000303HB-BELL Transcription_Regulator(from iTAK)
TALE Transcription_Regulator(from PlantTFDB)
details
CFinderM000322Endocytosis
protein refolding,
vesicle docking involved in exocytosis,
nucleus,
details
CFinderM000344signal peptidase complex,
Protein_export
methylation,
signal peptide processing,
nucleobase-containing compound metabolic process,
details
CFinderM000353intracellular,
cellular protein modification process,
Ubiquitin_mediated_proteolysis
Ribosome
ubiquitin-protein ligase activity,
Ribosome
translation,
methylation,
translational initiation,
nucleobase-containing compound metabolic process,
RNA_polymerase
structural constituent of ribosome,
transcription, DNA-dependent,
details
CFinderM000369translational elongation,
Ribosome
Ribosome
structural constituent of ribosome,
intracellular,
ubiquitin thiolesterase activity,
details
CFinderM000416basal lamina,
G-protein coupled acetylcholine receptor signaling pathway
receptor clustering,
laminin binding
nucleosome,
details
CFinderM000417Spliceosome
nucleotide binding,
nucleic acid binding,
vesicle docking involved in exocytosis,
Endocytosis
vesicle-mediated transport,
details
CFinderM000423Endocytosis
proteolysis,
vesicle docking involved in exocytosis,
details
CFinderM000440Endocytosis
cell wall,
apoplast,
xyloglucan:xyloglucosyl transferase activity,
cellular glucan metabolic process,
vesicle docking involved in exocytosis,
serine-type carboxypeptidase activity,
details
CFinderM000476Oxidative_phosphorylation
mitochondrial envelope,
mitochondrial_respiratory_chain_complex_III
vesicle docking involved in exocytosis,
mitochondrial electron transport, ubiquinol to cytochrome c,
ATPase activity, coupled to transmembrane movement of substances,
ubiquitin thiolesterase activity,
Endocytosis
Phagosome
details
CFinderM000488microtubule,
protein complex,
structural constituent of cytoskeleton,
protein polymerization,
microtubule-based process,
Phagosome
GTP_catabolic_process
GTPase activity,
GTP binding,
adenosylhomocysteinase activity,
one-carbon metabolic process,
vesicle docking involved in exocytosis,
exocyst,
Cysteine_and_methionine_metabolism
ubiquitin thiolesterase activity,
details
CFinderM000491intracellular,
GDP-mannose metabolic process,
ubiquitin-dependent protein catabolic process,
intracellular transport,
GDP-mannose 4,6-dehydratase activity,
Ribosome
translation,
vesicle docking involved in exocytosis,
proteasome core complex, alpha-subunit complex,
proteasome core complex,
large ribosomal subunit,
Ribosome
proteolysis involved in cellular protein catabolic process,
structural constituent of ribosome,
endopeptidase activity,
threonine-type endopeptidase activity,
details
CFinderM000590Ribosome
translation,
structural constituent of ribosome,
SNF2 Transcription_Regulator(from iTAK)
intracellular,
RNA_degradation
details
CFinderM000657vesicle docking involved in exocytosis,
Oxidative_phosphorylation
Endocytosis
nucleosome,
vesicle-mediated transport,
nucleosome assembly,
details
CFinderM000838Ribosome
translation,
structural constituent of ribosome,
methylation,
large ribosomal subunit,
intracellular,
nucleobase-containing compound metabolic process,
details
CFinderM000867protein complex,
mediator complex,
RNA_polymerase_II_transcription_cofactor_activity
protein polymerization,
regulation of transcription from RNA polymerase II promoter,
vesicle docking involved in exocytosis,
vesicle-mediated transport,
GTP_catabolic_process
details
CFinderM001023vesicle docking involved in exocytosis,
vesicle-mediated transport,
details
CFinderM001147SWI/SNF-SWI3 Transcription_Regulator(from iTAK)
Alfin-like Transcription_Regulator(from iTAK)
nucleotidyltransferase activity,
TORC1_complex
mediator complex,
phospholipid metabolic process,
TOR_signaling
phospholipase A2 activity,
lipid catabolic process,
methylation,
Linoleic_acid_metabolism
Arachidonic_acid_metabolism
Ether_lipid_metabolism
alpha-Linolenic_acid_metabolism
details
CFinderM001185NF-YC Transcription_Regulator(from PlantTFDB)
mediator complex,
CCAAT-binding factor complex,
GATA Transcription_Regulator(from PlantTFDB)
C2C2-GATA Transcription_Regulator(from iTAK)
Endocytosis
RNA_polymerase_II_transcription_cofactor_activity
sequence-specific DNA binding,
sequence-specific DNA binding transcription factor activity,
vesicle docking involved in exocytosis,
regulation of transcription from RNA polymerase II promoter,
regulation of transcription, DNA-dependent,
vesicle-mediated transport,
protein_heterodimerization_activity
details
CFinderM001334proton-transporting V-type ATPase, V0 domain,
mediator complex,
proton-transporting two-sector ATPase complex, proton-transporting domain,
RNA metabolic process,
regulation of transcription from RNA polymerase II promoter,
ATP hydrolysis coupled proton transport,
details
CFinderM001337GT41 GlycosylTransferases
DDT Transcription_Regulator(from iTAK)
proton-transporting V-type ATPase, V0 domain,
ATP hydrolysis coupled proton transport,
RNA metabolic process,
details

4.Expression profilings


Show details about module gene expression profiling