CFinderM000077's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
transcription, DNA-dependent,0.017131539GO:0006351

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000183G0320Transducin/WD40 repeat-like superfamily proteinAT1G65030 (1.90E-37)
PH01000265G0490zinc ion binding;transcription regulatorsAT4G35540 (4.10E-38)
PH01000366G0740plant UBX domain-containing protein 3AT4G22150 (8.40E-75)
PH01000969G0640cobalt ion bindingAT3G15000 (1.70E-81)
PH01001874G0080RNA recognition motif and CCHC-type zinc finger domains containing proteinAT2G24590 (3.60E-37)
PH01006302G0030Transcription elongation factor (TFIIS) family proteinAT4G24200 (2.80E-50)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000014transcription, DNA-dependent,
Spliceosome
details
CFinderM000069Ribosome_biogenesis_in_eukaryotes
Ino80_complex
ATP-dependent_5'-3'_DNA_helicase_activity
rRNA (adenine-N6,N6-)-dimethyltransferase activity,
rRNA methyltransferase activity,
rRNA (adenine) methyltransferase activity,
snoRNA binding,
snRNA_pseudouridine_synthesis
rRNA modification,
details
CFinderM000129GH9 Glycoside_Hydrolases
RLK-Pelle_LRR-IV (from iTAK)
details
CFinderM000205RLK-Pelle_LRR-XI-2 (from iTAK)
mRNA processing,
details
CFinderM000241signal peptidase complex,
Protein_export
signal peptide processing,
details
CFinderM000259transcription, DNA-dependent,
RNA_polymerase
Purine_metabolism
Pyrimidine_metabolism
details
CFinderM000306protein import into mitochondrial matrix,
mitochondrial outer membrane translocase complex,
large ribosomal subunit,
transcription, DNA-dependent,
details
CFinderM000307amine metabolic process,
quinone binding,
copper ion binding,
protein import into mitochondrial matrix,
mitochondrial outer membrane translocase complex,
Ribosome_biogenesis_in_eukaryotes
transcription, DNA-dependent,
details
CFinderM000411transcription, DNA-dependent,
nucleus,
bHLH Transcription_Regulator(from PlantTFDB)
details

4.Expression profilings