1.Module annotation (GSEA enrichment result) Function Annotation | FDR | Gene Ontolog | diaminopimelate epimerase activity, | 0.004774555 | GO:0008837 | pyrroline-5-carboxylate reductase activity, | 0.004774555 | GO:0004735 | translation, | 0.011017937 | GO:0006412 | proline biosynthetic process, | 0.011017937 | GO:0006561 | lysine biosynthetic process via diaminopimelate, | 0.011017937 | GO:0009089 | eukaryotic translation elongation factor 1 complex, | 0.012495898 | GO:0005853 | translational elongation, | 0.020629596 | GO:0006414 | cellular protein modification process, | 0.021439698 | GO:0006464 | Lysine_biosynthesis | 0.028093808 | KEGG | intracellular, | 0.030492923 | GO:0005622 | translation elongation factor activity, | 0.039716515 | GO:0003746 |
2.Module member annotation Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | PH01000102G0440 | ubiquitin-protein ligase 1 | AT1G55860 (0) | PH01000158G0110 | Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6 | AT1G30230 (1.50E-72) | PH01000274G1080 | Ribosomal L5P family protein | AT5G45775 (5.10E-88) | PH01000362G0600 | methyltransferases;copper ion binding | AT1G64600 (7.00E-155) | PH01000570G0430 | diaminopimelate epimerase family protein | AT3G53580 (3.00E-132) | PH01001739G0230 | pyrroline-5- carboxylate (P5C) reductase | AT5G14800 (1.00E-100) |
3.Direct connection functional modules Module ID | Function Annotation | Overlap condition | CFinderM000068 | cellular protein modification process, ubiquitin-protein ligase activity, Ubiquitin_mediated_proteolysis binding, intracellular, protein binding, CE8 Carbohydrate_Esterases GH28 Glycoside_Hydrolases Alfin-like Transcription_Regulator(from iTAK) SWI/SNF-SWI3 Transcription_Regulator(from iTAK) TORC1_complex
| details | CFinderM000146 | cellular protein modification process, intracellular, Ubiquitin_mediated_proteolysis
| details | CFinderM000227 | Valine,_leucine_and_isoleucine_biosynthesis COPII_vesicle_coating intracellular, translational elongation,
| details | CFinderM000284 | cellular protein modification process, Ubiquitin_mediated_proteolysis intracellular, ubiquitin-protein ligase activity, binding,
| details | CFinderM000353 | intracellular, cellular protein modification process, Ubiquitin_mediated_proteolysis Ribosome ubiquitin-protein ligase activity, Ribosome translation, methylation, translational initiation, nucleobase-containing compound metabolic process, RNA_polymerase structural constituent of ribosome, transcription, DNA-dependent,
| details | CFinderM000687 | Ubiquitin_mediated_proteolysis GH35 Glycoside_Hydrolases
cullin-RING ubiquitin ligase complex, Nucleotide_excision_repair metallocarboxypeptidase activity,
| details | CFinderM000769 | cellular protein modification process, Ubiquitin_mediated_proteolysis ubiquitin-protein ligase activity, intracellular, binding, carbon-sulfur lyase activity,
| details | CFinderM000911 | intracellular, Ribosome translation, PHD Transcription_Regulator(from iTAK) structural constituent of ribosome, protein import into nucleus,
| details |
4.Expression profilings |