|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | pyridoxine biosynthetic process, | 0.0046875 | GO:0008615 | | S-adenosylmethionine_biosynthetic_process | 0.008197999 | GO:0006556 | | proteolysis, | 0.020275674 | GO:0006508 | | pyridoxamine-phosphate oxidase activity, | 0.024691552 | GO:0004733 | | oxidoreductase activity, acting on the CH-NH2 group of donors, | 0.024691552 | GO:0016638 | | methionine adenosyltransferase activity, | 0.024691552 | GO:0004478 | | Endocytosis | 0.026959452 | KEGG | | aminopeptidase activity, | 0.028788811 | GO:0004177 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000109G1220 | vacuolar protein sorting-associated protein 28 homolog 1 | AT4G21560 (7.40E-68) | | PH01000181G0770 | Prolyl oligopeptidase family protein | AT2G47390 (0.00E+00) | | PH01000455G0920 | Zn-dependent exopeptidases superfamily protein | AT5G60160 (0.00E+00) | | PH01000548G0090 | DNA/RNA-binding protein Kin17, conserved region | AT1G55460 (8.00E-130) | | PH01000680G0690 | RmlC-like cupins superfamily protein | AT2G28680 (3.00E-123) | | PH01001004G0380 | SIT4 phosphatase-associated family protein | AT1G30470 (0.00E+00) | | PH01001362G0300 | SIT4 phosphatase-associated family protein | AT1G30470 (0.00E+00) | | PH01001894G0060 | pyridoxin (pyrodoxamine) 5-phosphate oxidase | AT5G49970 (0.00E+00) | | PH01002923G0190 | - | AT2G47010 (0.00E+00) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000190 | pyridoxine biosynthetic process,
S-adenosylmethionine_biosynthetic_process
proteolysis,
pyridoxamine-phosphate oxidase activity,
methionine adenosyltransferase activity,
oxidoreductase activity, acting on the CH-NH2 group of donors,
aminopeptidase activity,
serine-type peptidase activity,
FMN binding,
| details | | CFinderM000296 | aspartic-type endopeptidase activity,
proteolysis,
drug transmembrane transport,
drug transmembrane transporter activity,
antiporter activity,
| details | | CFinderM000324 | pyridoxine biosynthetic process,
S-adenosylmethionine_biosynthetic_process
GT8 GlycosylTransferases
pyridoxamine-phosphate oxidase activity,
oxidoreductase activity, acting on the CH-NH2 group of donors,
methionine adenosyltransferase activity,
| details | | CFinderM000360 | protein arginylation,
arginyltransferase activity,
RNA_degradation
MYB-related Transcription_Regulator(from iTAK)
MYB_related Transcription_Regulator(from PlantTFDB)
| details | | CFinderM000864 | mitochondrial inner membrane presequence translocase complex,
P-P-bond-hydrolysis-driven protein transmembrane transporter activity,
Endocytosis
| details | | CFinderM000935 | tRNA aminoacylation for protein translation,
Spliceosome
| details | | CFinderM000937 | | details | | CFinderM000990 | MBF1 Transcription_Regulator(from iTAK)
RNA_degradation
| details | | CFinderM001090 | GT14 GlycosylTransferases
proteolysis,
membrane,
aminopeptidase activity,
| details | | CFinderM001235 | ubiquitin ligase complex,
protein ubiquitination,
binding,
Ubiquitin_mediated_proteolysis
RNA_degradation
| details | | CFinderM001239 | DNA repair,
| details | | CFinderM001313 | spliceosomal complex,
aminopeptidase activity,
ubiquitin thiolesterase activity,
nuclear mRNA splicing, via spliceosome,
Spliceosome
| details | | CFinderM001347 | ubiquitin-dependent protein catabolic process,
| details | | CFinderM001420 | heat shock protein binding,
Protein_processing_in_endoplasmic_reticulum
unfolded protein binding,
CAMK_CDPK (from iTAK)
response to heat,
protein folding,
| details |
4.Expression profilings |
