1.Module annotation (GSEA enrichment result) Function Annotation | FDR | Gene Ontolog | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis | 0.000437541 | KEGG | aromatic amino acid family biosynthetic process, | 0.00983268 | GO:0009073 | 3-dehydroquinate synthase activity, | 0.009988646 | GO:0003856 | ribonucleoside_binding | 0.014971734 | GO:0032549 | transcription, DNA-dependent, | 0.029936724 | GO:0006351 | DNA-directed RNA polymerase activity, | 0.043089795 | GO:0003899 |
2.Module member annotation Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | PH01000334G0560 | Protein of unknown function (DUF630 and DUF632) | AT5G25590 (2.00E-158) | PH01000551G0090 | RING/FYVE/PHD zinc finger superfamily protein | AT1G43770 (3.50E-22) | PH01000551G0210 | RING/FYVE/PHD zinc finger superfamily protein | AT1G43770 (2.60E-25) | PH01000701G0790 | - | - (-) | PH01001226G0560 | Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain | AT1G65920 (3.00E-166) | PH01003129G0180 | nuclear RNA polymerase D2A | AT3G23780 (0.00E+00) | PH01006031G0060 | 3-dehydroquinate synthase, putative | AT5G66120 (1.00E-170) |
3.Direct connection functional modules Module ID | Function Annotation | Overlap condition | CFinderM000527 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis 3-dehydroquinate synthase activity, regulation_of_cell_cycle aromatic amino acid family biosynthetic process, regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity protein_kinase_binding
| details | CFinderM000638 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis aromatic amino acid family biosynthetic process, 3-dehydroquinate synthase activity, B3 Transcription_Regulator(from PlantTFDB) SNF2 Transcription_Regulator(from iTAK) Others Transcription_Regulator(from iTAK)
| details | CFinderM000788 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis 3-dehydroquinate synthase activity, B3-ARF Transcription_Regulator(from iTAK) ARF Transcription_Regulator(from PlantTFDB) cytoplasm, protein complex, aromatic amino acid family biosynthetic process, response to hormone stimulus, protein polymerization, Plant_hormone_signal_transduction
| details | CFinderM000939 | microtubule-based movement, microtubule associated complex, Phenylalanine,_tyrosine_and_tryptophan_biosynthesis microtubule motor activity, aromatic amino acid family biosynthetic process, 3-dehydroquinate synthase activity, minus-end-directed_microtubule_motor_activity RNA_degradation
| details | CFinderM000998 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis Lysine_degradation HB-other Transcription_Regulator(from PlantTFDB) histone_methylation histone_lysine_methylation aromatic amino acid family biosynthetic process, SET Transcription_Regulator(from iTAK)
| details | CFinderM001002 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis aromatic amino acid family biosynthetic process, cytokinesis microtubule cytoskeleton organization, 3-dehydroquinate synthase activity,
| details | CFinderM001003 | Endocytosis STE_STE11 (from iTAK)
| details | CFinderM001059 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis 3-dehydroquinate synthase activity, SNARE_interactions_in_vesicular_transport Golgi vesicle transport, aromatic amino acid family biosynthetic process, phosphatidylinositol metabolic process, RNA_degradation
| details | CFinderM001179 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis aromatic amino acid family biosynthetic process,
| details | CFinderM001205 | ribonucleoside_binding transcription, DNA-dependent, DNA-directed RNA polymerase activity, Drug_metabolism_-_cytochrome_P450 Metabolism_of_xenobiotics_by_cytochrome_P450 Glutathione_metabolism
| details | CFinderM001399 | RNA_transport Phenylalanine,_tyrosine_and_tryptophan_biosynthesis 3-dehydroquinate synthase activity, Base_excision_repair
| details | CFinderM001400 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis 3-dehydroquinate synthase activity, ribonuclease H activity, DNA photolyase activity, cytokinesis aromatic amino acid family biosynthetic process, microtubule cytoskeleton organization, RNA metabolic process, DNA_replication microtubule binding, ubiquitin ligase complex, Ubiquitin_mediated_proteolysis protein ubiquitination, DNA repair,
| details | CFinderM001756 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis Lipoic_acid_metabolism HB-BELL Transcription_Regulator(from iTAK) TALE Transcription_Regulator(from PlantTFDB) aromatic amino acid family biosynthetic process, lipoate biosynthetic process, lipoate synthase activity, 3-dehydroquinate synthase activity,
| details |
4.Expression profilings |