CFinderM000681's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
protein arginylation,0.000500023GO:0016598
GH47 Glycoside_Hydrolases0.001249648GFam
arginyltransferase activity,0.005708601GO:0004057
mannosyl-oligosaccharide 1,2-alpha-mannosidase activity,0.014259018GO:0004571
Various_types_of_N-glycan_biosynthesis0.034196632KEGG
N-Glycan_biosynthesis0.034196632KEGG

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000148G0350arginine-tRNA protein transferase 2AT3G11240 (4.00E-116)
PH01000204G0450Transducin/WD40 repeat-like superfamily proteinAT2G26060 (2.00E-125)
PH01000274G0920alpha-mannosidase 3AT1G30000 (0.00E+00)
PH01000519G0850RINT-1 / TIP-1 familyAT3G47700 (0.00E+00)
PH01000705G0460-AT3G17900 (8.50E-80)
PH01001333G0220transmembrane nine 1AT1G10950 (0)
PH01001491G0170Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family proteinAT5G55510 (4.30E-20)
PH01002688G0170KH domain-containing proteinAT4G10070 (2.20E-45)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000263Spliceosome
HRT-like Transcription_Regulator(from PlantTFDB)
HRT Transcription_Regulator(from iTAK)
nucleotide binding,
nucleic acid binding,
serine-type endopeptidase activity,
details
CFinderM000333protein arginylation,
RNA_polymerase_complex
arginyltransferase activity,
transcription, DNA-dependent,
DNA-directed RNA polymerase activity,
details
CFinderM000360protein arginylation,
arginyltransferase activity,
RNA_degradation
MYB-related Transcription_Regulator(from iTAK)
MYB_related Transcription_Regulator(from PlantTFDB)
details
CFinderM000680protein arginylation,
mitochondrial matrix,
arginyltransferase activity,
RNA methyltransferase activity,
RNA processing,
details
CFinderM000934protein import into nucleus,
nucleobase-containing compound metabolic process,
bZIP Transcription_Regulator(from PlantTFDB)
RNA binding,
details
CFinderM000937details
CFinderM001063CMGC_CDK-CDK8 (from iTAK)
protein arginylation,
arginyltransferase activity,
RNA_degradation
details
CFinderM001192HRT Transcription_Regulator(from iTAK)
HRT-like Transcription_Regulator(from PlantTFDB)
isocitrate metabolic process,
PHD Transcription_Regulator(from iTAK)
COPI vesicle coat,
membrane coat,
Glutathione_metabolism
Citrate_cycle_(TCA_cycle)
Carbon_fixation_pathways_in_prokaryotes
Peroxisome
isocitrate dehydrogenase (NADP+) activity,
details
CFinderM001193HRT Transcription_Regulator(from iTAK)
HRT-like Transcription_Regulator(from PlantTFDB)
GH10 Glycoside_Hydrolases
CBM22 Carbohydrate-Binding_Modules
hydrolase activity, acting on glycosyl bonds,
galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity,
integral to membrane,
details
CFinderM001430HRT Transcription_Regulator(from iTAK)
HRT-like Transcription_Regulator(from PlantTFDB)
GH10 Glycoside_Hydrolases
CBM22 Carbohydrate-Binding_Modules
hydrolase activity, acting on glycosyl bonds,
details
CFinderM001493ARID Transcription_Regulator(from iTAK)
magnesium_ion_transport
magnesium_ion_transmembrane_transporter_activity
details
CFinderM001605isocitrate metabolic process,
isocitrate dehydrogenase (NADP+) activity,
Carbon_fixation_pathways_in_prokaryotes
Citrate_cycle_(TCA_cycle)
Glutathione_metabolism
Peroxisome
NAD binding,
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor,
magnesium ion binding,
galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity,
membrane coat,
COPI vesicle coat,
structural molecule activity,
details
CFinderM001762isocitrate metabolic process,
formaldehyde_catabolic_process
isocitrate dehydrogenase (NADP+) activity,
S-formylglutathione hydrolase activity,
galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity,
carboxylesterase activity,
Carbon_fixation_pathways_in_prokaryotes
Peroxisome
Glutathione_metabolism
Citrate_cycle_(TCA_cycle)
NAD binding,
details
CFinderM001792galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity,
isocitrate metabolic process,
PHD Transcription_Regulator(from iTAK)
isocitrate dehydrogenase (NADP+) activity,
Carbon_fixation_pathways_in_prokaryotes
Peroxisome
Glutathione_metabolism
Citrate_cycle_(TCA_cycle)
details
CFinderM001817GH10 Glycoside_Hydrolases
CBM22 Carbohydrate-Binding_Modules
details

4.Expression profilings