CFinderM000769's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     

Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
cellular protein modification process,3.90E-08GO:0006464
Ubiquitin_mediated_proteolysis1.56E-06KEGG
ubiquitin-protein ligase activity,1.25E-05GO:0004842
intracellular,0.000224758GO:0005622
binding,0.000488954GO:0005488
carbon-sulfur lyase activity,0.003674942GO:0016846

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000102G0440ubiquitin-protein ligase 1AT1G55860 (0)
PH01000159G1160-AT3G50370 (2.00E-109)
PH01002158G0240Pyridoxal phosphate (PLP)-dependent transferases superfamily proteinAT1G34060 (1.00E-106)
PH01002905G0130tubulin folding cofactor BAT3G10220 (2.70E-86)
PH01003025G0200ubiquitin-protein ligase 1AT1G55860 (0.00E+00)
PH01004867G0080ubiquitin-protein ligase 1AT1G55860 (0)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000068cellular protein modification process,
ubiquitin-protein ligase activity,
Ubiquitin_mediated_proteolysis
binding,
intracellular,
protein binding,
CE8 Carbohydrate_Esterases
GH28 Glycoside_Hydrolases
Alfin-like Transcription_Regulator(from iTAK)
SWI/SNF-SWI3 Transcription_Regulator(from iTAK)
TORC1_complex
details
CFinderM000107diaminopimelate epimerase activity,
pyrroline-5-carboxylate reductase activity,
translation,
proline biosynthetic process,
lysine biosynthetic process via diaminopimelate,
eukaryotic translation elongation factor 1 complex,
translational elongation,
cellular protein modification process,
Lysine_biosynthesis
intracellular,
translation elongation factor activity,
details
CFinderM000146cellular protein modification process,
intracellular,
Ubiquitin_mediated_proteolysis
details
CFinderM000284cellular protein modification process,
Ubiquitin_mediated_proteolysis
intracellular,
ubiquitin-protein ligase activity,
binding,
details
CFinderM000353intracellular,
cellular protein modification process,
Ubiquitin_mediated_proteolysis
Ribosome
ubiquitin-protein ligase activity,
Ribosome
translation,
methylation,
translational initiation,
nucleobase-containing compound metabolic process,
RNA_polymerase
structural constituent of ribosome,
transcription, DNA-dependent,
details
CFinderM000545binding,
SNF2 Transcription_Regulator(from iTAK)
helicase activity,
ubiquitin-protein ligase activity,
cellular protein modification process,
TOR_signaling
nucleic acid binding,
TORC1_complex
DNA binding,
hydrolase_activity,_acting_on_acid_anhydrides
RNA metabolic process,
RNA_transport
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay,
Ubiquitin_mediated_proteolysis
nucleotide binding,
RNA binding,
ATP binding,
protein binding,
details
CFinderM000687Ubiquitin_mediated_proteolysis
GH35 Glycoside_Hydrolases

cullin-RING ubiquitin ligase complex,
Nucleotide_excision_repair
metallocarboxypeptidase activity,
details
CFinderM000891cellular protein modification process,
Ubiquitin_mediated_proteolysis
binding,
ubiquitin-protein ligase activity,
SNF2 Transcription_Regulator(from iTAK)
RNA metabolic process,
intracellular,
details
CFinderM000911intracellular,
Ribosome
translation,
PHD Transcription_Regulator(from iTAK)
structural constituent of ribosome,
protein import into nucleus,
details
CFinderM000912intracellular,
SWI/SNF-SWI3 Transcription_Regulator(from iTAK)
Ribosome
translation,
cellular protein modification process,
structural constituent of ribosome,
Ubiquitin_mediated_proteolysis
details
CFinderM001147SWI/SNF-SWI3 Transcription_Regulator(from iTAK)
Alfin-like Transcription_Regulator(from iTAK)
nucleotidyltransferase activity,
TORC1_complex
mediator complex,
phospholipid metabolic process,
TOR_signaling
phospholipase A2 activity,
lipid catabolic process,
methylation,
Linoleic_acid_metabolism
Arachidonic_acid_metabolism
Ether_lipid_metabolism
alpha-Linolenic_acid_metabolism
details
CFinderM001221cellular protein modification process,
phospholipid metabolic process,
Alfin-like Transcription_Regulator(from iTAK)
ubiquitin-protein ligase activity,
Ubiquitin_mediated_proteolysis
lipid catabolic process,
phospholipase A2 activity,
zinc ion binding,
intracellular,
protein binding,
binding,
Arachidonic_acid_metabolism
Linoleic_acid_metabolism
Ether_lipid_metabolism
alpha-Linolenic_acid_metabolism
Glycerophospholipid_metabolism
details

4.Expression profilings