|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | glutamyl-tRNA aminoacylation, | 0.010408042 | GO:0006424 | | guanosine tetraphosphate metabolic process, | 0.010408042 | GO:0015969 | | tRNA aminoacylation, | 0.017318301 | GO:0043039 | | Aminoacyl-tRNA_biosynthesis | 0.021988553 | KEGG | | Porphyrin_and_chlorophyll_metabolism | 0.021988553 | KEGG | | glutamate-tRNA ligase activity, | 0.027170926 | GO:0004818 | | ligase activity, forming aminoacyl-tRNA and related compounds, | 0.030753322 | GO:0016876 | | tRNA binding, | 0.030753322 | GO:0000049 | | tRNA aminoacylation for protein translation, | 0.035676856 | GO:0006418 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000044G1520 | pentatricopeptide (PPR) repeat-containing protein | AT5G04810 (2.00E-164) | | PH01000240G0440 | Cytochrome b561/ferric reductase transmembrane with DOMON related domain | AT3G61750 (1.50E-88) | | PH01000343G0840 | histone mono-ubiquitination 1 | AT2G44950 (2.10E-32) | | PH01000416G0980 | RELA/SPOT homolog 1 | AT4G02260 (0.00E+00) | | PH01000457G0010 | glutamate tRNA synthetase | AT5G64050 (0.00E+00) | | PH01000583G0410 | F-box protein 7 | AT1G21760 (8.00E-108) | | PH01001116G0330 | Tetratricopeptide repeat (TPR)-like superfamily protein | AT5G67570 (1.70E-88) | | PH01004903G0030 | - | AT5G50350 (1.10E-30) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000237 | solute:hydrogen antiporter activity,
| details | | CFinderM000637 | guanosine tetraphosphate metabolic process,
carotenoid biosynthetic process,
Carotenoid_biosynthesis
Purine_metabolism
| details | | CFinderM001247 | CAMTA Transcription_Regulator(from PlantTFDB)
superoxide metabolic process,
Peroxisome
Protein_export
superoxide dismutase activity,
| details | | CFinderM001401 | Plant_hormone_signal_transduction
bZIP Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001402 | phosphatidylinositol-mediated signaling,
RNA 3'-end processing,
RNA polyadenylation,
phosphatidylinositol_biosynthetic_process
phosphatidylinositol phosphorylation,
1-phosphatidylinositol_4-kinase_activity
Inositol_phosphate_metabolism
Phosphatidylinositol_signaling_system
mRNA_surveillance_pathway
polynucleotide adenylyltransferase activity,
| details | | CFinderM001447 | superoxide metabolic process,
superoxide dismutase activity,
Peroxisome
| details | | CFinderM001513 | Glycine,_serine_and_threonine_metabolism
GH17 Glycoside_Hydrolases
L-serine biosynthetic process,
phosphoglycerate dehydrogenase activity,
Methane_metabolism
cofactor binding,
| details | | CFinderM001520 | SWI/SNF-SWI3 Transcription_Regulator(from iTAK)
Glycine,_serine_and_threonine_metabolism
L-serine biosynthetic process,
RNA metabolic process,
Methane_metabolism
phosphoglycerate dehydrogenase activity,
glycopeptide_alpha-N-acetylgalactosaminidase_activity
| details | | CFinderM001650 | sphingolipid metabolic process,
oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor,
glucosylceramidase activity,
Butanoate_metabolism
Pyruvate_metabolism
Citrate_cycle_(TCA_cycle)
Glycolysis_/_Gluconeogenesis
serine-type carboxypeptidase activity,
nucleotidyltransferase activity,
| details | | CFinderM001675 | GT47 GlycosylTransferases
dephosphorylation,
Butanoate_metabolism
oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor,
Pyruvate_metabolism
Citrate_cycle_(TCA_cycle)
Glycolysis_/_Gluconeogenesis
| details |
4.Expression profilings |
