CFinderM000889's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
mRNA_surveillance_pathway0.032892728KEGG
RNA_degradation0.032892728KEGG

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000000G4500Stabilizer of iron transporter SufD / Polynucleotidyl transferaseAT1G48410 (0.00E+00)
PH01000030G0260SNARE associated Golgi protein familyAT4G17790 (4.00E-99)
PH01000087G0240Translation elongation factor EF1A/initiation factor IF2gamma family proteinAT5G10630 (2.00E-177)
PH01000123G0740RNA helicase, ATP-dependent, SK12/DOB1 proteinAT2G06990 (0.00E+00)
PH01000368G0150-- (-)
PH01000877G0130Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger proteinAT3G14980 (1.80E-99)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000410Ribosome_biogenesis_in_eukaryotes
IWS1 Transcription_Regulator(from iTAK)
tyrosine biosynthetic process,
ribosomal_large_subunit_biogenesis
ribosomal_large_subunit_export_from_nucleus
small-subunit processome,
cytoplasm,
details
CFinderM001506chromosome, centromeric region,
mitosis,
helicase activity,
RNA_degradation
details
CFinderM001667spliceosomal_tri-snRNP_complex_assembly
chromosome, centromeric region,
U4/U6_x_U5_tri-snRNP_complex
chromosome,
DNA topological change,
mitosis,
nuclear mRNA splicing, via spliceosome,
details

4.Expression profilings