|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | protein import into nucleus, | 0.005060443 | GO:0006606 | | nucleobase-containing compound metabolic process, | 0.014849055 | GO:0006139 | | Ribosome_biogenesis_in_eukaryotes | 0.016946651 | KEGG |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000083G0650 | cell division cycle 48C | AT3G01610 (0.00E+00) | | PH01000133G1350 | importin alpha isoform 2 | AT4G16143 (0.00E+00) | | PH01000600G0250 | EXS (ERD1/XPR1/SYG1) family protein | AT5G35730 (5.00E-99) | | PH01000696G0080 | Plastid-lipid associated protein PAP / fibrillin family protein | AT5G09820 (8.40E-55) | | PH01004002G0170 | 3-5 exonuclease domain-containing protein | AT5G24340 (4.90E-87) | | PH01005670G0060 | Protein of unknown function (DUF185) | AT3G28700 (8.00E-172) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000008 | TKL-Pl-4 (from iTAK)
RLK-Pelle_RLCK-VIIa-2 (from iTAK)
transferase activity, transferring phosphorus-containing groups,
protein phosphorylation,
Spliceosome
protein kinase activity,
ATP binding,
protein serine/threonine kinase activity,
exocyst,
chloroplast,
| details | | CFinderM000765 | protein import into nucleus,
nucleus,
nucleobase-containing compound metabolic process,
bZIP Transcription_Regulator(from PlantTFDB)
Spliceosome
| details | | CFinderM000934 | protein import into nucleus,
nucleobase-containing compound metabolic process,
bZIP Transcription_Regulator(from PlantTFDB)
RNA binding,
| details | | CFinderM001149 | ketol-acid reductoisomerase activity,
branched chain family amino acid biosynthetic process,
cellular amino acid biosynthetic process,
SCY1_SCYL2 (from iTAK)
coenzyme binding,
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor,
Endocytosis
| details | | CFinderM001488 | STAT Transcription_Regulator(from PlantTFDB)
TKL-Pl-5 (from iTAK)
Lysine_degradation
nucleus,
chloroplast,
SET Transcription_Regulator(from iTAK)
histone_methylation
mRNA processing,
histone_lysine_methylation
| details | | CFinderM001705 | Lysine_degradation
SET Transcription_Regulator(from iTAK)
histone_methylation
histone_lysine_methylation
chloroplast,
histone-lysine N-methyltransferase activity,
histone_binding
ubiquitin-dependent protein catabolic process,
| details |
4.Expression profilings |
