CFinderM001010's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     

Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
RLK-Pelle_PERK-2 (from iTAK)7.30E-05GFam
ethylene mediated signaling pathway,0.000223187GO:0009873
endoplasmic reticulum membrane,0.00043996GO:0005789
Plant_hormone_signal_transduction0.000779822KEGG
protein histidine kinase activity,0.000794395GO:0004673
Others Transcription_Regulator(from iTAK)0.007244686GFam
two-component sensor activity,0.008523914GO:0000155
protein tyrosine kinase activity,0.01158383GO:0004713
two-component signal transduction system (phosphorelay),0.012410269GO:0000160
EIL Transcription_Regulator(from PlantTFDB)0.014599106GFam
two-component response regulator activity,0.01463736GO:0000156
signal transducer activity,0.017078098GO:0004871
sulfate assimilation,0.046291133GO:0000103

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000151G1330NB-ARC domain-containing disease resistance proteinAT3G46730 (1.90E-70)
PH01000251G1270APS kinaseAT2G14750 (3.50E-58)
PH01000252G0640-- (-)
PH01000258G0590Fibronectin type III domain-containing proteinAT3G24440 (4.00E-122)
PH01000280G1350RNA-binding KH domain-containing proteinAT4G26000 (5.90E-69)
PH01000281G1000-- (-)
PH01000428G0370DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domainAT5G60410 (0.00E+00)
PH01000770G0540ETHYLENE-INSENSITIVE3-like 3AT1G73730 (3.00E-122)
PH01000784G0060zinc induced facilitator-like 1AT5G13750 (4.10E-28)
PH01000914G0720lipoxygenase 1AT1G55020 (9.00E-119)
PH01000980G0060peroxisomal adenine nucleotide carrier 1AT3G05290 (2.00E-109)
PH01001115G0570SH3 domain-containing proteinAT1G31440 (5.40E-87)
PH01001377G0320Protein phosphatase 2C family proteinAT1G16220 (3.00E-113)
PH01001523G0080-AT5G17620 (5.40E-11)
PH01001523G0110S-adenosyl-L-methionine-dependent methyltransferases superfamily proteinAT5G04370 (1.10E-67)
PH01002057G0390Mitochondrial substrate carrier family proteinAT5G46800 (5.00E-113)
PH01002108G0160Calcineurin-like metallo-phosphoesterase superfamily proteinAT3G03305 (2.00E-14)
PH01002108G0170Calcineurin-like metallo-phosphoesterase superfamily proteinAT3G03305 (5.00E-152)
PH01002422G0030Signal transduction histidine kinase, hybrid-type, ethylene sensorAT3G04580 (0.00E+00)
PH01002452G0230Protein kinase protein with adenine nucleotide alpha hydrolases-like domainAT3G13690 (0.00E+00)
PH01002502G0070-- (-)
PH01002749G0220Protein kinase protein with adenine nucleotide alpha hydrolases-like domainAT3G13690 (0.00E+00)
PH01004629G0120ferredoxin 3AT2G27510 (2.90E-40)
PH01005673G0050Signal transduction histidine kinase, hybrid-type, ethylene sensorAT3G04580 (0.00E+00)
PH01005947G0010Ankyrin repeat family proteinAT2G31820 (2.00E-178)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000066oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen,
lipoxygenase activity,
Linoleic_acid_metabolism
iron ion binding,
metal ion binding,
oxidation-reduction process,
MYB Transcription_Regulator(from PlantTFDB)
details
CFinderM000320nicotinate phosphoribosyltransferase activity,
nicotinate-nucleotide diphosphorylase (carboxylating) activity,
adenylylsulfate_kinase_activity
nicotinate nucleotide salvage,
omega_peptidase_activity
SNARE_interactions_in_vesicular_transport
Nicotinate_and_nicotinamide_metabolism
Nitrogen_metabolism
sulfate assimilation,
NAD biosynthetic process,
nucleoside-triphosphatase activity,
metal ion transmembrane transporter activity,
ER to Golgi vesicle-mediated transport,
magnesium_ion_transport
transmembrane transport,
cis-Golgi network,
Golgi membrane,
details
CFinderM000394Endocytosis
Alanine,_aspartate_and_glutamate_metabolism
IMP biosynthetic process,
purine ribonucleotide biosynthetic process,
phosphatidylcholine metabolic process,
RLK-Pelle_RLCK-VI (from iTAK)
Ether_lipid_metabolism
details
CFinderM000588lipid catabolic process,
MYB Transcription_Regulator(from PlantTFDB)
details
CFinderM000688GT64 GlycosylTransferases
Alanine,_aspartate_and_glutamate_metabolism
intrinsic to endoplasmic reticulum membrane,
Nicotinate_and_nicotinamide_metabolism
Terpenoid_backbone_biosynthesis
regulation of ARF GTPase activity,
isoprenoid biosynthetic process,
details
CFinderM000985nuclear mRNA splicing, via spliceosome,
RLK-Pelle_RLCK-XII-1 (from iTAK)
spliceosomal complex,
cis-Golgi network,
Golgi membrane,
lysine biosynthetic process via diaminopimelate,
ER to Golgi vesicle-mediated transport,
dihydrodipicolinate synthase activity,
snRNA_binding
SNARE_interactions_in_vesicular_transport
Lysine_biosynthesis
protein binding,
lyase activity,
details
CFinderM001043lipoxygenase activity,
oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen,
Linoleic_acid_metabolism
iron ion binding,
metal ion binding,
MYB Transcription_Regulator(from PlantTFDB)
details
CFinderM001053endoplasmic reticulum membrane,
ethylene mediated signaling pathway,
Others Transcription_Regulator(from iTAK)
protein histidine kinase activity,
Plant_hormone_signal_transduction
two-component sensor activity,
signal transducer activity,
two-component response regulator activity,
details
CFinderM001304nucleoside-triphosphatase activity,
ATPase activity, coupled to transmembrane movement of substances,
GT47 GlycosylTransferases
RLK-Pelle_CR4L (from iTAK)
ABC_transporters
ATPase activity,
ATP binding,
nucleotide binding,
SNF2 Transcription_Regulator(from iTAK)
details
CFinderM001432RLK-Pelle_CR4L (from iTAK)
ubiquitin ligase complex,
Ubiquitin_mediated_proteolysis
regulation of ARF GTPase activity,
details
CFinderM001436STE_STE20-Fray (from iTAK)
CAMTA Transcription_Regulator(from PlantTFDB)
Ubiquitin_mediated_proteolysis
details
CFinderM001457mRNA_surveillance_pathway
Diterpenoid_biosynthesis
CAMTA Transcription_Regulator(from PlantTFDB)
protein binding,
mechanically-gated_ion_channel_activity
details
CFinderM001458mRNA_surveillance_pathway
AGC_RSK-2 (from iTAK)
SBP Transcription_Regulator(from PlantTFDB)
cell death,
details
CFinderM001513Glycine,_serine_and_threonine_metabolism
GH17 Glycoside_Hydrolases
L-serine biosynthetic process,
phosphoglycerate dehydrogenase activity,
Methane_metabolism
cofactor binding,
details
CFinderM001826regulation of ARF GTPase activity,
details

4.Expression profilings


Show details about module gene expression profiling