CFinderM001030's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
protein import into mitochondrial inner membrane,0.010105302GO:0045039
RLK-Pelle_L-LEC (from iTAK)0.019762079GFam
protein methylation,0.042847002GO:0006479

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000131G1400-AT1G12650 (6.00E-49)
PH01000444G0680FAD-linked oxidases family proteinAT5G06580 (6.50E-36)
PH01000537G0710Concanavalin A-like lectin protein kinase family proteinAT4G29050 (4.60E-88)
PH01000646G0440arginine methyltransferase 11AT4G29510 (7.00E-171)
PH01000804G0180Tim10/DDP family zinc finger proteinAT2G29530 (1.60E-26)
PH01001117G0100PSF2AT3G12530 (2.30E-77)
PH01001577G0380RNA polymerase II transcription mediatorsAT4G00450 (2.30E-30)
PH01001603G0360-AT4G08510 (3.90E-24)
PH01001659G0290phosducin-like protein 3 homologAT3G50960 (2.90E-50)
PH01006137G0060protein binding;zinc ion bindingAT5G51700 (7.40E-65)
PH01006214G0030Ribosomal protein L20AT1G16740 (7.40E-55)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000048details
CFinderM000183Oxidative_phosphorylation
mitochondrial intermembrane space,
protein import into mitochondrial inner membrane,
mitochondrial proton-transporting ATP synthase complex, coupling factor F(o),
copper chaperone activity,
ubiquinol-cytochrome-c reductase activity,
mitochondrial electron transport, ubiquinol to cytochrome c,
copper ion transport,
ATP synthesis coupled proton transport,
ribosome biogenesis,
hydrogen ion transmembrane transporter activity,
details
CFinderM000186acid-amino acid ligase activity,
details
CFinderM000433Ribosome_biogenesis_in_eukaryotes
ATP-dependent helicase activity,
threonine-tRNA ligase activity,
helicase activity,
details
CFinderM000615cellular protein metabolic process,
RLK-Pelle_RLCK-VIIa-2 (from iTAK)
protein methylation,
protein refolding,
RNA_degradation
details
CFinderM001029translation,
structural constituent of ribosome,
intracellular,
Ribosome
large ribosomal subunit,
thiolester_hydrolase_activity
rRNA binding,
RNA_polymerase
Fatty_acid_biosynthesis
DNA-directed RNA polymerase activity,
fatty acid biosynthetic process,
transcription, DNA-dependent,
details
CFinderM001031intracellular,
translation,
structural constituent of ribosome,
protein import into mitochondrial inner membrane,
Ribosome
RLK-Pelle_L-LEC (from iTAK)
large ribosomal subunit,
ribosome biogenesis,
details
CFinderM001082IWS1 Transcription_Regulator(from iTAK)
protein catabolic process,
details
CFinderM001083MYB-related Transcription_Regulator(from iTAK)
MYB_related Transcription_Regulator(from PlantTFDB)
Pseudo ARR-B Transcription_Regulator(from iTAK)
protein import into mitochondrial inner membrane,
transcription, DNA-dependent,
nucleus,
IWS1 Transcription_Regulator(from iTAK)
GNAT Transcription_Regulator(from iTAK)
details
CFinderM001332protein import into mitochondrial inner membrane,
mitochondrial electron transport, ubiquinol to cytochrome c,
ubiquinol-cytochrome-c reductase activity,
mitochondrial proton-transporting ATP synthase complex, coupling factor F(o),
ATP synthesis coupled proton transport,
hydrogen ion transmembrane transporter activity,
details
CFinderM001470Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
transcription factor TFIIF complex,
transcription from RNA polymerase II promoter,
transcription initiation from RNA polymerase II promoter,
L-phenylalanine biosynthetic process,
Basal_transcription_factors
prephenate dehydratase activity,
details
CFinderM001551carbohydrate phosphorylation,
galactokinase activity,
galactose metabolic process,
kinase activity,
details
CFinderM001721STE_STE11 (from iTAK)
outer membrane,
Endocytosis
details
CFinderM001749phosphoribosylformylglycinamidine cyclo-ligase activity,
autophagy,
'de novo' IMP biosynthetic process,
cellular protein metabolic process,
details
CFinderM001771Terpenoid_backbone_biosynthesis
isoprenoid biosynthetic process,
regulation of Rab GTPase activity,
Rab GTPase activator activity,
acid-amino acid ligase activity,
details
CFinderM001834phosphopyruvate hydratase complex,
TAZ Transcription_Regulator(from iTAK)
L-malate dehydrogenase activity,
transcription cofactor activity,
malate dehydrogenase activity,
phosphopyruvate hydratase activity,
histone acetyltransferase activity,
malate metabolic process,
cellular carbohydrate metabolic process,
MYB-related Transcription_Regulator(from iTAK)
MYB_related Transcription_Regulator(from PlantTFDB)
details
CFinderM001844PLATZ Transcription_Regulator(from iTAK)
TRAF Transcription_Regulator(from iTAK)
microtubule,
protein complex,
Plant_hormone_signal_transduction
Phagosome
protein polymerization,
microtubule-based process,
details

4.Expression profilings


Show details about module gene expression profiling