CFinderM001202's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
mediator complex,0.003932211GO:0016592
L-arabinose metabolic process,0.003936515GO:0046373
regulation of transcription from RNA polymerase II promoter,0.00981978GO:0006357
alpha-N-arabinofuranosidase activity,0.010934765GO:0046556
RNA_polymerase_II_transcription_cofactor_activity0.016384213GO:0001104

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000178G0210-- (-)
PH01000216G1200-AT1G45688 (2.10E-43)
PH01000503G0700RNA polymerase II transcription mediatorsAT1G55325 (0.00E+00)
PH01001719G0330-AT4G39840 (6.70E-48)
PH01002064G0120embryo defective 2423AT3G48470 (9.00E-174)
PH01002250G0240Protein phosphatase 2C family proteinAT2G46920 (4.00E-116)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000068cellular protein modification process,
ubiquitin-protein ligase activity,
Ubiquitin_mediated_proteolysis
binding,
intracellular,
protein binding,
CE8 Carbohydrate_Esterases
GH28 Glycoside_Hydrolases
Alfin-like Transcription_Regulator(from iTAK)
SWI/SNF-SWI3 Transcription_Regulator(from iTAK)
TORC1_complex
details
CFinderM000544details
CFinderM000545binding,
SNF2 Transcription_Regulator(from iTAK)
helicase activity,
ubiquitin-protein ligase activity,
cellular protein modification process,
TOR_signaling
nucleic acid binding,
TORC1_complex
DNA binding,
hydrolase_activity,_acting_on_acid_anhydrides
RNA metabolic process,
RNA_transport
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay,
Ubiquitin_mediated_proteolysis
nucleotide binding,
RNA binding,
ATP binding,
protein binding,
details
CFinderM001147SWI/SNF-SWI3 Transcription_Regulator(from iTAK)
Alfin-like Transcription_Regulator(from iTAK)
nucleotidyltransferase activity,
TORC1_complex
mediator complex,
phospholipid metabolic process,
TOR_signaling
phospholipase A2 activity,
lipid catabolic process,
methylation,
Linoleic_acid_metabolism
Arachidonic_acid_metabolism
Ether_lipid_metabolism
alpha-Linolenic_acid_metabolism
details
CFinderM001525MYB-related Transcription_Regulator(from iTAK)
details
CFinderM001579mediator complex,
vesicle docking involved in exocytosis,
regulation of transcription from RNA polymerase II promoter,
RNA_polymerase_II_transcription_cofactor_activity
vesicle-mediated transport,
nucleotidyltransferase activity,
details
CFinderM001586mediator complex,
regulation of transcription from RNA polymerase II promoter,
transcription, DNA-dependent,
ribonucleoside_binding
RNA_polymerase_II_transcription_cofactor_activity
RNA_polymerase
details
CFinderM001601GH35 Glycoside_Hydrolases
details
CFinderM001819SNF2 Transcription_Regulator(from iTAK)
cis-Golgi network,
mRNA_surveillance_pathway
details
CFinderM001820mediator complex,
CBM43 Carbohydrate-Binding_Modules
GH17 Glycoside_Hydrolases
details
CFinderM001849SNF2 Transcription_Regulator(from iTAK)
mediator complex,
regulation of transcription from RNA polymerase II promoter,
details

4.Expression profilings