1.Module annotation (GSEA enrichment result) Function Annotation | FDR | Gene Ontolog | ribonucleoside_binding | 1.90E-05 | GO:0032549 | transcription, DNA-dependent, | 0.000124443 | GO:0006351 | DNA-directed RNA polymerase activity, | 0.000167578 | GO:0003899 | Drug_metabolism_-_cytochrome_P450 | 0.042797192 | KEGG | Metabolism_of_xenobiotics_by_cytochrome_P450 | 0.042797192 | KEGG | Glutathione_metabolism | 0.04399086 | KEGG |
2.Module member annotation Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | PH01000055G1690 | nuclear RNA polymerase D2A | AT3G23780 (0.00E+00) | PH01000334G0560 | Protein of unknown function (DUF630 and DUF632) | AT5G25590 (2.00E-158) | PH01001627G0380 | glutathione S-transferase THETA 1 | AT5G41210 (3.80E-48) | PH01003129G0180 | nuclear RNA polymerase D2A | AT3G23780 (0.00E+00) | PH01003930G0110 | Transducin/WD40 repeat-like superfamily protein | AT3G21060 (9.00E-172) | PH01004590G0080 | RPM1 interacting protein 2 | AT4G25230 (8.60E-87) |
3.Direct connection functional modules Module ID | Function Annotation | Overlap condition | CFinderM000363 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis aromatic amino acid family biosynthetic process, 3-dehydroquinate synthase activity, ribonucleoside_binding transcription, DNA-dependent, DNA-directed RNA polymerase activity,
| details | CFinderM000527 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis 3-dehydroquinate synthase activity, regulation_of_cell_cycle aromatic amino acid family biosynthetic process, regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity protein_kinase_binding
| details | CFinderM000567 | C2H2 Transcription_Regulator(from PlantTFDB) Peroxisome Mismatch_repair
| details | CFinderM000787 | TKL-Pl-3 (from iTAK) RLK-Pelle_LRR-II (from iTAK) RNA-directed RNA polymerase activity, protein phosphorylation,
| details | CFinderM000788 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis 3-dehydroquinate synthase activity, B3-ARF Transcription_Regulator(from iTAK) ARF Transcription_Regulator(from PlantTFDB) cytoplasm, protein complex, aromatic amino acid family biosynthetic process, response to hormone stimulus, protein polymerization, Plant_hormone_signal_transduction
| details | CFinderM001002 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis aromatic amino acid family biosynthetic process, cytokinesis microtubule cytoskeleton organization, 3-dehydroquinate synthase activity,
| details | CFinderM001003 | Endocytosis STE_STE11 (from iTAK)
| details | CFinderM001057 | RLK-Pelle_URK-1 (from iTAK) NEK (from iTAK) chromatin silencing at telomere, chromatin modification, histone acetylation,
| details | CFinderM001059 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis 3-dehydroquinate synthase activity, SNARE_interactions_in_vesicular_transport Golgi vesicle transport, aromatic amino acid family biosynthetic process, phosphatidylinositol metabolic process, RNA_degradation
| details | CFinderM001166 | DNA_replication Nucleotide_excision_repair Mismatch_repair Riboflavin_metabolism histone acetylation, chromatin modification, chromatin silencing at telomere,
| details | CFinderM001243 | regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity Metabolism_of_xenobiotics_by_cytochrome_P450 Drug_metabolism_-_cytochrome_P450 Glutathione_metabolism protein_kinase_binding NAD+ ADP-ribosyltransferase activity,
| details | CFinderM001383 | Metabolism_of_xenobiotics_by_cytochrome_P450 Drug_metabolism_-_cytochrome_P450 Glutathione_metabolism protein transport, small GTPase mediated signal transduction,
| details | CFinderM001384 | protein transport,
| details | CFinderM001625 | SNF2 Transcription_Regulator(from iTAK) cellular_homeostasis mitochondrial outer membrane, RNA methylation, Homologous_recombination
| details | CFinderM001720 | RNA_polymerase_II_transcription_cofactor_activity NAD+ ADP-ribosyltransferase activity, mediator complex, nuclear pore, regulation of transcription from RNA polymerase II promoter, protein transport,
| details | CFinderM001758 | nuclear pore, MYB-related Transcription_Regulator(from iTAK) MYB_related Transcription_Regulator(from PlantTFDB)
| details |
4.Expression profilings |