CFinderM001205's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     

Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
ribonucleoside_binding1.90E-05GO:0032549
transcription, DNA-dependent,0.000124443GO:0006351
DNA-directed RNA polymerase activity,0.000167578GO:0003899
Drug_metabolism_-_cytochrome_P4500.042797192KEGG
Metabolism_of_xenobiotics_by_cytochrome_P4500.042797192KEGG
Glutathione_metabolism0.04399086KEGG

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000055G1690nuclear RNA polymerase D2AAT3G23780 (0.00E+00)
PH01000334G0560Protein of unknown function (DUF630 and DUF632)AT5G25590 (2.00E-158)
PH01001627G0380glutathione S-transferase THETA 1AT5G41210 (3.80E-48)
PH01003129G0180nuclear RNA polymerase D2AAT3G23780 (0.00E+00)
PH01003930G0110Transducin/WD40 repeat-like superfamily proteinAT3G21060 (9.00E-172)
PH01004590G0080RPM1 interacting protein 2AT4G25230 (8.60E-87)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000363Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
aromatic amino acid family biosynthetic process,
3-dehydroquinate synthase activity,
ribonucleoside_binding
transcription, DNA-dependent,
DNA-directed RNA polymerase activity,
details
CFinderM000527Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
3-dehydroquinate synthase activity,
regulation_of_cell_cycle
aromatic amino acid family biosynthetic process,
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
protein_kinase_binding
details
CFinderM000567C2H2 Transcription_Regulator(from PlantTFDB)
Peroxisome
Mismatch_repair
details
CFinderM000787TKL-Pl-3 (from iTAK)
RLK-Pelle_LRR-II (from iTAK)
RNA-directed RNA polymerase activity,
protein phosphorylation,
details
CFinderM000788Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
3-dehydroquinate synthase activity,
B3-ARF Transcription_Regulator(from iTAK)
ARF Transcription_Regulator(from PlantTFDB)
cytoplasm,
protein complex,
aromatic amino acid family biosynthetic process,
response to hormone stimulus,
protein polymerization,
Plant_hormone_signal_transduction
details
CFinderM001002Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
aromatic amino acid family biosynthetic process,
cytokinesis
microtubule cytoskeleton organization,
3-dehydroquinate synthase activity,
details
CFinderM001003Endocytosis
STE_STE11 (from iTAK)
details
CFinderM001057RLK-Pelle_URK-1 (from iTAK)
NEK (from iTAK)
chromatin silencing at telomere,
chromatin modification,
histone acetylation,
details
CFinderM001059Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
3-dehydroquinate synthase activity,
SNARE_interactions_in_vesicular_transport
Golgi vesicle transport,
aromatic amino acid family biosynthetic process,
phosphatidylinositol metabolic process,
RNA_degradation
details
CFinderM001166DNA_replication
Nucleotide_excision_repair
Mismatch_repair
Riboflavin_metabolism
histone acetylation,
chromatin modification,
chromatin silencing at telomere,
details
CFinderM001243regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
Metabolism_of_xenobiotics_by_cytochrome_P450
Drug_metabolism_-_cytochrome_P450
Glutathione_metabolism
protein_kinase_binding
NAD+ ADP-ribosyltransferase activity,
details
CFinderM001383Metabolism_of_xenobiotics_by_cytochrome_P450
Drug_metabolism_-_cytochrome_P450
Glutathione_metabolism
protein transport,
small GTPase mediated signal transduction,
details
CFinderM001384protein transport,
details
CFinderM001625SNF2 Transcription_Regulator(from iTAK)
cellular_homeostasis
mitochondrial outer membrane,
RNA methylation,
Homologous_recombination
details
CFinderM001720RNA_polymerase_II_transcription_cofactor_activity
NAD+ ADP-ribosyltransferase activity,
mediator complex,
nuclear pore,
regulation of transcription from RNA polymerase II promoter,
protein transport,
details
CFinderM001758nuclear pore,
MYB-related Transcription_Regulator(from iTAK)
MYB_related Transcription_Regulator(from PlantTFDB)
details

4.Expression profilings