CFinderM001301's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
TALE Transcription_Regulator(from PlantTFDB)0.020423403GFam
SBP Transcription_Regulator(from PlantTFDB)0.020423403GFam
HB-other Transcription_Regulator(from PlantTFDB)0.020423403GFam
glycogen biosynthetic process,0.025642583GO:0005978
regulation of actin filament polymerization,0.025642583GO:0030833
cytoskeleton,0.04470824GO:0005856

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000043G1720KNOTTED1-like homeobox gene 3AT5G25220 (2.40E-62)
PH01000106G1250nodulin-related protein 1AT2G03440 (4.60E-15)
PH01000284G0790AAA-type ATPase family proteinAT4G04910 (1.00E-91)
PH01000548G0610squamosa promoter binding protein-like 2AT5G43270 (5.60E-35)
PH01000736G0120Regulator of chromosome condensation (RCC1) family proteinAT3G15430 (2.00E-152)
PH01000903G0520ADP glucose pyrophosphorylase 1AT5G48300 (0.00E+00)
PH01001744G0370Arp2/3 complex, 34 kD subunit p34-ArcAT1G30825 (8.40E-89)
PH01001830G0370nitrate reductase 1AT1G77760 (8.00E-102)
PH01004069G0090Sulfite exporter TauE/SafE family proteinAT2G25737 (2.00E-135)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000646ion transport,
Ubiquitin_mediated_proteolysis
membrane,
details
CFinderM000846TALE Transcription_Regulator(from PlantTFDB)
HB-other Transcription_Regulator(from PlantTFDB)
Peroxisome
details
CFinderM001300regulation of actin filament polymerization,
HD-ZIP Transcription_Regulator(from PlantTFDB)
SBP Transcription_Regulator(from PlantTFDB)
HB-HD-ZIP Transcription_Regulator(from iTAK)
cytoskeleton,
molybdenum ion binding,
details
CFinderM001591Valine,_leucine_and_isoleucine_biosynthesis
Valine,_leucine_and_isoleucine_degradation
metabolic process,
branched chain family amino acid metabolic process,
endodeoxyribonuclease activity, producing 5'-phosphomonoesters,
sterol_24-C-methyltransferase_activity
branched-chain-amino-acid transaminase activity,
transferase activity, transferring pentosyl groups,
steroid biosynthetic process,
histidine biosynthetic process,
HB-other Transcription_Regulator(from PlantTFDB)
TALE Transcription_Regulator(from PlantTFDB)
Pantothenate_and_CoA_biosynthesis
Histidine_metabolism
Steroid_biosynthesis
details
CFinderM001633TALE Transcription_Regulator(from PlantTFDB)
HB-other Transcription_Regulator(from PlantTFDB)
Peroxisome
details
CFinderM001699Valine,_leucine_and_isoleucine_biosynthesis
Valine,_leucine_and_isoleucine_degradation
HB-other Transcription_Regulator(from PlantTFDB)
TALE Transcription_Regulator(from PlantTFDB)
sterol_24-C-methyltransferase_activity
5S rRNA binding,
endodeoxyribonuclease activity, producing 5'-phosphomonoesters,
branched-chain-amino-acid transaminase activity,
Pantothenate_and_CoA_biosynthesis
Steroid_biosynthesis
steroid biosynthetic process,
branched chain family amino acid metabolic process,
ion transport,
details
CFinderM001880RNA_transport
C2H2 Transcription_Regulator(from PlantTFDB)
RLK-Pelle_RLCK-VIIa-2 (from iTAK)
details

4.Expression profilings


Show details about module gene expression profiling