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1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis | 0.00206279 | KEGG | | 3-dehydroquinate synthase activity, | 0.009547618 | GO:0003856 | | ribonuclease H activity, | 0.009547618 | GO:0004523 | | DNA photolyase activity, | 0.020671962 | GO:0003913 | | cytokinesis | 0.02340397 | GO:0000910 | | aromatic amino acid family biosynthetic process, | 0.02340397 | GO:0009073 | | microtubule cytoskeleton organization, | 0.023846096 | GO:0000226 | | RNA metabolic process, | 0.024058461 | GO:0016070 | | DNA_replication | 0.030290945 | KEGG | | microtubule binding, | 0.033354053 | GO:0008017 | | ubiquitin ligase complex, | 0.044732883 | GO:0000151 | | Ubiquitin_mediated_proteolysis | 0.046269678 | KEGG | | protein ubiquitination, | 0.048306504 | GO:0016567 | | DNA repair, | 0.048306504 | GO:0006281 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000062G1980 | microtubule-associated proteins 65-1 | AT5G55230 (4.00E-173) | | PH01000253G0680 | plant U-box 17 | AT1G29340 (1.00E-143) | | PH01000343G0610 | anaphase-promoting complex subunit 8 | AT3G48150 (0.00E+00) | | PH01000835G0700 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | AT2G25100 (3.00E-103) | | PH01001219G0420 | photolyase/blue-light receptor 2 | AT2G47590 (8.00E-113) | | PH01006031G0060 | 3-dehydroquinate synthase, putative | AT5G66120 (1.00E-170) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000043 | C3H Transcription_Regulator(from PlantTFDB)
DNA repair,
| details | | CFinderM000363 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
aromatic amino acid family biosynthetic process,
3-dehydroquinate synthase activity,
ribonucleoside_binding
transcription, DNA-dependent,
DNA-directed RNA polymerase activity,
| details | | CFinderM000527 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
3-dehydroquinate synthase activity,
regulation_of_cell_cycle
aromatic amino acid family biosynthetic process,
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
protein_kinase_binding
| details | | CFinderM000638 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
aromatic amino acid family biosynthetic process,
3-dehydroquinate synthase activity,
B3 Transcription_Regulator(from PlantTFDB)
SNF2 Transcription_Regulator(from iTAK)
Others Transcription_Regulator(from iTAK)
| details | | CFinderM000788 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
3-dehydroquinate synthase activity,
B3-ARF Transcription_Regulator(from iTAK)
ARF Transcription_Regulator(from PlantTFDB)
cytoplasm,
protein complex,
aromatic amino acid family biosynthetic process,
response to hormone stimulus,
protein polymerization,
Plant_hormone_signal_transduction
| details | | CFinderM000939 | microtubule-based movement,
microtubule associated complex,
Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
microtubule motor activity,
aromatic amino acid family biosynthetic process,
3-dehydroquinate synthase activity,
minus-end-directed_microtubule_motor_activity
RNA_degradation
| details | | CFinderM000998 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
Lysine_degradation
HB-other Transcription_Regulator(from PlantTFDB)
histone_methylation
histone_lysine_methylation
aromatic amino acid family biosynthetic process,
SET Transcription_Regulator(from iTAK)
| details | | CFinderM001002 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
aromatic amino acid family biosynthetic process,
cytokinesis
microtubule cytoskeleton organization,
3-dehydroquinate synthase activity,
| details | | CFinderM001059 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
3-dehydroquinate synthase activity,
SNARE_interactions_in_vesicular_transport
Golgi vesicle transport,
aromatic amino acid family biosynthetic process,
phosphatidylinositol metabolic process,
RNA_degradation
| details | | CFinderM001179 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
aromatic amino acid family biosynthetic process,
| details | | CFinderM001399 | RNA_transport
Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
3-dehydroquinate synthase activity,
Base_excision_repair
| details | | CFinderM001522 | SNF2 Transcription_Regulator(from iTAK)
nucleolus,
nuclear pore,
RNA_transport
| details | | CFinderM001625 | SNF2 Transcription_Regulator(from iTAK)
cellular_homeostasis
mitochondrial outer membrane,
RNA methylation,
Homologous_recombination
| details | | CFinderM001695 | C3H Transcription_Regulator(from PlantTFDB)
DNA photolyase activity,
| details | | CFinderM001756 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
Lipoic_acid_metabolism
HB-BELL Transcription_Regulator(from iTAK)
TALE Transcription_Regulator(from PlantTFDB)
aromatic amino acid family biosynthetic process,
lipoate biosynthetic process,
lipoate synthase activity,
3-dehydroquinate synthase activity,
| details | | CFinderM001885 | Base_excision_repair
NAD+ ADP-ribosyltransferase activity,
GT29 GlycosylTransferases
protein ADP-ribosylation,
sialyltransferase activity,
protein ubiquitination,
protein glycosylation,
| details | | CFinderM001886 | Steroid_biosynthesis
ubiquitin ligase complex,
sterol_24-C-methyltransferase_activity
dephosphorylation,
steroid biosynthetic process,
mRNA_surveillance_pathway
protein ubiquitination,
protein dephosphorylation,
| details | | CFinderM001897 | phosphatase activity,
mRNA_surveillance_pathway
dephosphorylation,
protein dephosphorylation,
protein ubiquitination,
protein tyrosine phosphatase activity,
protein tyrosine/serine/threonine phosphatase activity,
ubiquitin ligase complex,
| details |
4.Expression profilings |
