CFinderM001428's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
nuclear mRNA splicing, via spliceosome,0.000449345GO:0000398
spliceosomal complex,0.005488238GO:0005681
cell volume homeostasis,0.005512155GO:0006884
COPII_vesicle_coating0.006123277GO:0048208
lysine biosynthetic process via diaminopimelate,0.011013462GO:0009089
chloride transport,0.013939709GO:0006821
dihydrodipicolinate synthase activity,0.016306123GO:0008840
snRNA_binding0.021729609GO:0017069
Lysine_biosynthesis0.024707878KEGG

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000083G0280RGPR-relatedAT5G47490 (0.00E+00)
PH01000364G0200dihydrodipicolinate synthaseAT2G45440 (1.00E-135)
PH01001227G0170-- (-)
PH01001314G0520DNA-binding bromodomain-containing proteinAT5G55040 (4.60E-46)
PH01002073G0270P-loop containing nucleoside triphosphate hydrolases superfamily proteinAT4G30100 (0.00E+00)
PH01002164G0040-- (-)
PH01002251G0030nucleotide-sensitive chloride conductance regulator (ICln) family proteinAT5G62290 (3.20E-47)
PH01003718G0150U2 small nuclear ribonucleoprotein BAT2G30260 (5.20E-76)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000227Valine,_leucine_and_isoleucine_biosynthesis
COPII_vesicle_coating
intracellular,
translational elongation,
details
CFinderM000300nuclear mRNA splicing, via spliceosome,
dihydrodipicolinate synthase activity,
lysine biosynthetic process via diaminopimelate,
Lysine_biosynthesis
spliceosomal complex,
lyase activity,
snRNA_binding
rRNA binding,
metabolic process,
details
CFinderM000558Whirly Transcription_Regulator(from PlantTFDB)
COPII_vesicle_coating
aminoacyl-tRNA hydrolase activity,
intracellular,
details
CFinderM000826dihydrodipicolinate synthase activity,
Lysine_biosynthesis
lysine biosynthetic process via diaminopimelate,
spliceosomal complex,
nuclear mRNA splicing, via spliceosome,
lyase activity,
GT48 GlycosylTransferases
C3H Transcription_Regulator(from PlantTFDB)
rRNA binding,
details
CFinderM001134Lysine_biosynthesis
regulation of translational initiation,
eukaryotic translation initiation factor 3 complex,
spliceosomal complex,
Ribosome
details
CFinderM001171COPII_vesicle_coating
details
CFinderM001209Lysine_biosynthesis
dihydrodipicolinate synthase activity,
lysine biosynthetic process via diaminopimelate,
details
CFinderM001269regulation of translational initiation,
'de novo' IMP biosynthetic process,
autophagy,
phosphoribosylformylglycinamidine cyclo-ligase activity,
eukaryotic translation initiation factor 3 complex,
cytoplasm,
ribosome binding,
details
CFinderM001426protein import into mitochondrial outer membrane,
cell volume homeostasis,
'de novo' IMP biosynthetic process,
mitochondrial outer membrane translocase complex,
chloride transport,
phosphoribosylformylglycinamidine cyclo-ligase activity,
details
CFinderM001569Alanine,_aspartate_and_glutamate_metabolism
TAZ Transcription_Regulator(from iTAK)
Group-Pl-3 (from iTAK)
CMGC_CLK (from iTAK)
NF-YC Transcription_Regulator(from PlantTFDB)
HB-other Transcription_Regulator(from PlantTFDB)
arginine biosynthetic process,
'de novo' IMP biosynthetic process,
eukaryotic translation elongation factor 1 complex,
argininosuccinate synthase activity,
phosphoribosylformylglycinamidine cyclo-ligase activity,
details
CFinderM001680COPII_vesicle_coating
SET Transcription_Regulator(from iTAK)
potassium_ion_transmembrane_transport
details
CFinderM001749phosphoribosylformylglycinamidine cyclo-ligase activity,
autophagy,
'de novo' IMP biosynthetic process,
cellular protein metabolic process,
details

4.Expression profilings