CFinderM001444's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
nucleolus,0.010487208GO:0005730
SNARE_interactions_in_vesicular_transport0.017634235KEGG
Homologous_recombination0.017634235KEGG
SOS_response0.022500933GO:0009432
DNA metabolic process,0.031008689GO:0006259
ribosome biogenesis,0.031008689GO:0042254
single-stranded DNA binding,0.033703383GO:0003697
DNA-dependent ATPase activity,0.033703383GO:0008094

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000031G0300recA DNA recombination family proteinAT2G19490 (3.00E-143)
PH01000190G0040GTP binding;GTP bindingAT5G39960 (0.00E+00)
PH01000265G0190Pentatricopeptide repeat (PPR) superfamily proteinAT5G64320 (1.30E-39)
PH01000426G0150pescadillo-relatedAT5G14520 (0.00E+00)
PH01000783G0230Vesicle transport v-SNARE family proteinAT5G39510 (2.70E-80)
PH01000856G0080-AT1G57765 (4.70E-24)
PH01002276G0030-- (-)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000495SNF2 Transcription_Regulator(from iTAK)
proteasomal ubiquitin-dependent protein catabolic process,
nucleotide-excision repair,
ribosome biogenesis,
eukaryotic translation initiation factor 3 complex,
nucleolus,
helicase activity,
details
CFinderM000591HB-other Transcription_Regulator(from PlantTFDB)
SNARE_interactions_in_vesicular_transport
WASH_complex
actin cytoskeleton,
spliceosomal complex,
pre-mRNA_intronic_binding
details
CFinderM000804cysteine synthase activity,
chorismate mutase activity,
Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
SET Transcription_Regulator(from iTAK)
cysteine biosynthetic process from serine,
aromatic amino acid family biosynthetic process,
chorismate metabolic process,
SNARE_interactions_in_vesicular_transport
Sulfur_metabolism
Cysteine_and_methionine_metabolism
details
CFinderM000940nucleic acid binding,
Ribosome_biogenesis_in_eukaryotes
details
CFinderM001079SOS_response
DNA metabolic process,
cellular protein metabolic process,
details
CFinderM001272details
CFinderM001492mitochondrial inner membrane,
mitochondrial inner membrane presequence translocase complex,
nucleolus,
Ubiquitin_mediated_proteolysis
ribosome biogenesis,
details
CFinderM001522SNF2 Transcription_Regulator(from iTAK)
nucleolus,
nuclear pore,
RNA_transport
details
CFinderM001549SNARE_interactions_in_vesicular_transport
vesicle-mediated transport,
intracellular protein transport,
SNAP receptor activity,
structural molecule activity,
details
CFinderM001627SET Transcription_Regulator(from iTAK)
intracellular protein transport,
SNARE_interactions_in_vesicular_transport
mRNA_surveillance_pathway
details
CFinderM001702ribosome biogenesis,
nucleolus,
eukaryotic translation initiation factor 3 complex,
RNA_transport
details

4.Expression profilings