CFinderM001466's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     

Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
nucleobase-containing compound metabolic process,0.00989937GO:0006139
eukaryotic translation initiation factor 3 complex,0.013478707GO:0005852

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000010G2530ubiquitin-conjugating enzyme 5AT1G63800 (8.20E-68)
PH01000013G1500P-loop containing nucleoside triphosphate hydrolases superfamily proteinAT4G21800 (6.00E-127)
PH01000211G0840mRNAadenosine methylaseAT4G10760 (4.00E-166)
PH01000223G0730Nucleotidyltransferase family proteinAT2G39740 (4.50E-68)
PH01001756G0320Proteasome component (PCI) domain proteinAT5G15610 (3.00E-120)
PH01002296G0240Tetratricopeptide repeat (TPR)-like superfamily proteinAT1G05600 (2.60E-62)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000069Ribosome_biogenesis_in_eukaryotes
Ino80_complex
ATP-dependent_5'-3'_DNA_helicase_activity
rRNA (adenine-N6,N6-)-dimethyltransferase activity,
rRNA methyltransferase activity,
rRNA (adenine) methyltransferase activity,
snoRNA binding,
snRNA_pseudouridine_synthesis
rRNA modification,
details
CFinderM000341exosome_(RNase_complex)
COP9_signalosome
details
CFinderM000692CMGC_CLK (from iTAK)
ornithine_metabolic_process
histone deacetylation,
ornithine carbamoyltransferase activity,
carboxyl- or carbamoyltransferase activity,
histone deacetylase activity,
Arginine_and_proline_metabolism
cellular amino acid metabolic process,
details
CFinderM000693ornithine_metabolic_process
histone deacetylation,
protein import into nucleus,
ornithine carbamoyltransferase activity,
carboxyl- or carbamoyltransferase activity,
histone deacetylase activity,
Arginine_and_proline_metabolism
cellular amino acid metabolic process,
protein transporter activity,
amino acid binding,
details
CFinderM000765protein import into nucleus,
nucleus,
nucleobase-containing compound metabolic process,
bZIP Transcription_Regulator(from PlantTFDB)
Spliceosome
details
CFinderM000934protein import into nucleus,
nucleobase-containing compound metabolic process,
bZIP Transcription_Regulator(from PlantTFDB)
RNA binding,
details

4.Expression profilings