CFinderM001502's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
SET Transcription_Regulator(from iTAK)0.009341217GFam
ribonucleoprotein complex,0.011337369GO:0030529
nucleus,0.021873219GO:0005634
histone_lysine_methylation0.022655256GO:0034968
RNA processing,0.03488706GO:0006396

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000014G1010CTC-interacting domain 7AT2G26280 (2.00E-104)
PH01000653G0790-AT4G38280 (2.30E-12)
PH01000801G0160Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domainAT5G43960 (1.60E-42)
PH01001117G0590SAND family proteinAT2G28390 (4.20E-74)
PH01001462G0040La protein 1AT4G32720 (1.00E-101)
PH01002324G0300SET-domain containing protein lysine methyltransferase family proteinAT3G04380 (3.00E-123)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000691ornithine carbamoyltransferase activity,
phosphoribosyl-AMP cyclohydrolase activity,
ornithine_metabolic_process
carboxyl- or carbamoyltransferase activity,
histone deacetylase activity,
histone deacetylation,
Histidine_metabolism
histidine biosynthetic process,
Arginine_and_proline_metabolism
cellular amino acid metabolic process,
cellular protein metabolic process,
amino acid binding,
details
CFinderM000995nucleus,
riboflavin kinase activity,
RLK-Pelle_LRR-II (from iTAK)
B3-ARF Transcription_Regulator(from iTAK)
ARF Transcription_Regulator(from PlantTFDB)
Riboflavin_metabolism
DNA_replication
Mismatch_repair
Nucleotide_excision_repair
riboflavin biosynthetic process,
response to hormone stimulus,
details
CFinderM001166DNA_replication
Nucleotide_excision_repair
Mismatch_repair
Riboflavin_metabolism
histone acetylation,
chromatin modification,
chromatin silencing at telomere,
details
CFinderM001367histone deacetylation,
protein import into nucleus,
RLK-Pelle_RLCK-VIIa-2 (from iTAK)
histone deacetylase activity,
details
CFinderM001718phosphoribosyl-AMP cyclohydrolase activity,
histidine biosynthetic process,
RNA modification,
pseudouridine synthesis,
nuclear pore,
details
CFinderM001758nuclear pore,
MYB-related Transcription_Regulator(from iTAK)
MYB_related Transcription_Regulator(from PlantTFDB)
details
CFinderM001831details
CFinderM001848Valine,_leucine_and_isoleucine_biosynthesis
C5-Branched_dibasic_acid_metabolism
SBP Transcription_Regulator(from PlantTFDB)
Pantothenate_and_CoA_biosynthesis
Butanoate_metabolism
branched chain family amino acid biosynthetic process,
acetolactate synthase activity,
details
CFinderM001882Valine,_leucine_and_isoleucine_biosynthesis
C5-Branched_dibasic_acid_metabolism
branched chain family amino acid biosynthetic process,
SBP Transcription_Regulator(from PlantTFDB)
Butanoate_metabolism
Pantothenate_and_CoA_biosynthesis
acetolactate synthase activity,
details

4.Expression profilings