CFinderM001513's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
Glycine,_serine_and_threonine_metabolism0.001125158KEGG
GH17 Glycoside_Hydrolases0.00505333GFam
L-serine biosynthetic process,0.02185757GO:0006564
phosphoglycerate dehydrogenase activity,0.028530364GO:0004617
Methane_metabolism0.029575411KEGG
cofactor binding,0.046812746GO:0048037

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000025G0840Protein of unknown function (DUF1162)AT3G50380 (8.00E-141)
PH01000240G0440Cytochrome b561/ferric reductase transmembrane with DOMON related domainAT3G61750 (1.50E-88)
PH01000280G1350RNA-binding KH domain-containing proteinAT4G26000 (5.90E-69)
PH01001116G0330Tetratricopeptide repeat (TPR)-like superfamily proteinAT5G67570 (1.70E-88)
PH01001424G0230Glycosyl hydrolase superfamily proteinAT3G46570 (6.20E-83)
PH01004505G0030D-3-phosphoglycerate dehydrogenaseAT4G34200 (0.00E+00)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000837glutamyl-tRNA aminoacylation,
guanosine tetraphosphate metabolic process,
tRNA aminoacylation,
Aminoacyl-tRNA_biosynthesis
Porphyrin_and_chlorophyll_metabolism
glutamate-tRNA ligase activity,
ligase activity, forming aminoacyl-tRNA and related compounds,
tRNA binding,
tRNA aminoacylation for protein translation,
details
CFinderM000967TKL-Pl-1 (from iTAK)
GH17 Glycoside_Hydrolases
phosphate-containing compound metabolic process,
phospholipid transport,
magnesium ion binding,
details
CFinderM001010RLK-Pelle_PERK-2 (from iTAK)
ethylene mediated signaling pathway,
endoplasmic reticulum membrane,
Plant_hormone_signal_transduction
protein histidine kinase activity,
Others Transcription_Regulator(from iTAK)
two-component sensor activity,
protein tyrosine kinase activity,
two-component signal transduction system (phosphorelay),
EIL Transcription_Regulator(from PlantTFDB)
two-component response regulator activity,
signal transducer activity,
sulfate assimilation,
details
CFinderM001247CAMTA Transcription_Regulator(from PlantTFDB)
superoxide metabolic process,
Peroxisome
Protein_export
superoxide dismutase activity,
details
CFinderM001280GH17 Glycoside_Hydrolases
Arginine_and_proline_metabolism
phospholipid transport,
details
CFinderM001447superoxide metabolic process,
superoxide dismutase activity,
Peroxisome
details
CFinderM001520SWI/SNF-SWI3 Transcription_Regulator(from iTAK)
Glycine,_serine_and_threonine_metabolism
L-serine biosynthetic process,
RNA metabolic process,
Methane_metabolism
phosphoglycerate dehydrogenase activity,
glycopeptide_alpha-N-acetylgalactosaminidase_activity
details
CFinderM001709GH17 Glycoside_Hydrolases
Arginine_and_proline_metabolism
details
CFinderM001801GH17 Glycoside_Hydrolases
phospholipid transport,
phosphatidylinositol metabolic process,
Inositol_phosphate_metabolism
Phosphatidylinositol_signaling_system
RNA_degradation
Arginine_and_proline_metabolism
Phagosome
details
CFinderM001827ARID Transcription_Regulator(from iTAK)
GH17 Glycoside_Hydrolases
Arginine_and_proline_metabolism
ion transport,
details

4.Expression profilings