1.Module annotation (GSEA enrichment result) Function Annotation | FDR | Gene Ontolog | protein retention in ER lumen, | 0.005902928 | GO:0006621 | ER retention sequence binding, | 0.016397022 | GO:0046923 | peptidyl-prolyl cis-trans isomerase activity, | 0.036332079 | GO:0003755 | acid-amino acid ligase activity, | 0.047662712 | GO:0016881 |
2.Module member annotation Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | PH01000019G1850 | Heat shock protein 70 (Hsp 70) family protein | AT5G42020 (0.00E+00) | PH01000096G0370 | Pentatricopeptide repeat (PPR) superfamily protein | AT5G61990 (4.00E-118) | PH01001121G0400 | endoplasmic reticulum retention defective 2B | AT3G25040 (2.40E-97) | PH01001817G0340 | SMAD/FHA domain-containing protein | AT5G47790 (3.00E-116) | PH01002177G0070 | ubiquitin-conjugating enzyme 35 | AT1G78870 (3.40E-58) | PH01003285G0110 | Uncharacterized protein family (UPF0016) | AT5G36290 (1.30E-43) | PH01004638G0100 | Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein | AT3G63400 (3.50E-66) |
3.Direct connection functional modules Module ID | Function Annotation | Overlap condition | CFinderM000495 | SNF2 Transcription_Regulator(from iTAK) proteasomal ubiquitin-dependent protein catabolic process, nucleotide-excision repair, ribosome biogenesis, eukaryotic translation initiation factor 3 complex, nucleolus, helicase activity,
| details | CFinderM000879 | Alanine,_aspartate_and_glutamate_metabolism GNAT Transcription_Regulator(from iTAK) protein retention in ER lumen, nitrogen compound metabolic process, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, ER retention sequence binding, N-acetyltransferase_activity
| details | CFinderM000944 | TKL-Pl-6 (from iTAK) Ubiquitin_mediated_proteolysis
| details | CFinderM001272 | | details | CFinderM001451 | Protein_processing_in_endoplasmic_reticulum Protein_export mitosis, protein retention in ER lumen, ER retention sequence binding, spliceosomal complex, glycerol ether metabolic process, isomerase activity,
| details | CFinderM001555 | protein retention in ER lumen, RLK-Pelle_DLSV (from iTAK) ER retention sequence binding,
| details | CFinderM001580 | iron-sulfur cluster assembly, RNA processing,
| details | CFinderM001636 | GPI anchor metabolic process, double-strand break repair, protein folding, nucleus, DNA metabolic process, exonuclease activity, endonuclease activity, phosphoprotein phosphatase activity, manganese ion binding, peptidyl-prolyl cis-trans isomerase activity,
| details | CFinderM001678 | mRNA_cleavage_and_polyadenylation_specificity_factor_complex mRNA cleavage, protein retention in ER lumen, mRNA_polyadenylation RNA metabolic process, regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity ER retention sequence binding,
| details | CFinderM001702 | ribosome biogenesis, nucleolus, eukaryotic translation initiation factor 3 complex, RNA_transport
| details | CFinderM001798 | proton-transporting V-type ATPase, V0 domain, proton-transporting two-sector ATPase complex, proton-transporting domain, ATP hydrolysis coupled proton transport, Phagosome Oxidative_phosphorylation
| details | CFinderM001803 | spliceosomal complex, mitosis, Spliceosome protein dephosphorylation,
| details | CFinderM001810 | mitosis, spliceosomal complex, Spliceosome
| details |
4.Expression profilings |