|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | RNA_transport | 0.044179879 | KEGG | | mRNA_surveillance_pathway | 0.044179879 | KEGG |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000206G0390 | prenylated RAB acceptor 1.B4 | AT2G38360 (1.90E-40) | | PH01000561G0620 | Smg-4/UPF3 family protein | AT1G33980 (1.30E-76) | | PH01001019G0530 | Oligosaccharyltransferase complex/magnesium transporter family protein | AT2G19340 (6.00E-56) | | PH01001646G0290 | transmembrane protein-related | AT2G46060 (3.00E-107) | | PH01001737G0160 | prenylated RAB acceptor 1.B1 | AT3G56110 (2.60E-54) | | PH01001888G0170 | Heat shock protein DnaJ with tetratricopeptide repeat | AT5G12430 (4.00E-34) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000002 | extracellular region,
plant-type cell wall organization,
sexual reproduction,
glycerol metabolic process,
| details | | CFinderM000013 | cellulose biosynthetic process,
cellulose synthase (UDP-forming) activity,
response to oxidative stress,
extracellular polysaccharide biosynthetic process,
hydrolase activity, hydrolyzing O-glycosyl compounds,
carbohydrate metabolic process,
| details | | CFinderM000103 | plant-type cell wall organization,
extracellular region,
microtubule-based movement,
microtubule associated complex,
| details | | CFinderM000157 | RNA_transport
mRNA_surveillance_pathway
| details | | CFinderM000161 | Methane_metabolism
Phenylalanine_metabolism
Phenylpropanoid_biosynthesis
response to oxidative stress,
peroxidase activity,
heme binding,
cellulose biosynthetic process,
| details | | CFinderM000342 | ERF Transcription_Regulator(from PlantTFDB)
AP2/ERF-ERF Transcription_Regulator(from iTAK)
| details | | CFinderM000378 | extracellular region,
sexual reproduction,
RNA_transport
mRNA_surveillance_pathway
| details | | CFinderM000469 | CCAAT-binding factor complex,
NF-YA Transcription_Regulator(from PlantTFDB)
response to biotic stimulus,
| details | | CFinderM000528 | RLK-Pelle_RLCK-XIII (from iTAK)
base-excision repair,
Base_excision_repair
DNA-3-methyladenine glycosylase activity,
| details | | CFinderM000529 | RLK-Pelle_Extensin (from iTAK)
RLK-Pelle_RLCK-XIII (from iTAK)
| details | | CFinderM000689 | hydrolase activity, acting on ester bonds,
lipid metabolic process,
hydrolase activity,
RLK-Pelle_Extensin (from iTAK)
lipase activity,
lipid transport,
| details | | CFinderM000766 | MYB Transcription_Regulator(from PlantTFDB)
| details | | CFinderM000938 | proton-transporting two-sector ATPase complex, proton-transporting domain,
proton-transporting V-type ATPase, V0 domain,
binding,
mRNA_surveillance_pathway
hydrogen ion transmembrane transporter activity,
ATP hydrolysis coupled proton transport,
TORC1_complex
Phagosome
Oxidative_phosphorylation
phosphotransferase activity, alcohol group as acceptor,
TOR_signaling
rRNA_catabolic_process
| details | | CFinderM001484 | RLK-Pelle_RLCK-VI (from iTAK)
mRNA_surveillance_pathway
| details | | CFinderM001601 | GH35 Glycoside_Hydrolases
| details | | CFinderM001797 | proton-transporting two-sector ATPase complex, proton-transporting domain,
proton-transporting V-type ATPase, V0 domain,
mediator complex,
regulation of transcription from RNA polymerase II promoter,
ATP hydrolysis coupled proton transport,
MYB-related Transcription_Regulator(from iTAK)
RNA_polymerase_II_transcription_cofactor_activity
hydrogen ion transmembrane transporter activity,
Phagosome
Oxidative_phosphorylation
| details | | CFinderM001798 | proton-transporting V-type ATPase, V0 domain,
proton-transporting two-sector ATPase complex, proton-transporting domain,
ATP hydrolysis coupled proton transport,
Phagosome
Oxidative_phosphorylation
| details | | CFinderM001865 | mitochondrial respiratory chain complex IV,
mitochondrial inner membrane,
cytochrome-c oxidase activity,
Oxidative_phosphorylation
| details |
4.Expression profilings |
