1.Module annotation (GSEA enrichment result) Function Annotation | FDR | Gene Ontolog | mRNA_cleavage_and_polyadenylation_specificity_factor_complex | 0.009075425 | GO:0005847 | mRNA cleavage, | 0.016295424 | GO:0006379 | protein retention in ER lumen, | 0.016295424 | GO:0006621 | mRNA_polyadenylation | 0.016295424 | GO:0006378 | RNA metabolic process, | 0.043307393 | GO:0016070 | regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity | 0.043307393 | GO:0000079 | ER retention sequence binding, | 0.048886272 | GO:0046923 |
2.Module member annotation Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | PH01000812G0040 | Predicted eukaryotic LigT | AT3G16230 (5.70E-52) | PH01001121G0400 | endoplasmic reticulum retention defective 2B | AT3G25040 (2.40E-97) | PH01001235G0510 | Nucleoporin autopeptidase | AT1G10390 (4.00E-125) | PH01001376G0350 | Cyclin family protein | AT5G45190 (2.20E-82) | PH01001817G0340 | SMAD/FHA domain-containing protein | AT5G47790 (3.00E-116) | PH01002177G0070 | ubiquitin-conjugating enzyme 35 | AT1G78870 (3.40E-58) | PH01002350G0160 | cleavage and polyadenylation specificity factor 100 | AT5G23880 (0.00E+00) | PH01003285G0110 | Uncharacterized protein family (UPF0016) | AT5G36290 (1.30E-43) |
3.Direct connection functional modules Module ID | Function Annotation | Overlap condition | CFinderM000495 | SNF2 Transcription_Regulator(from iTAK) proteasomal ubiquitin-dependent protein catabolic process, nucleotide-excision repair, ribosome biogenesis, eukaryotic translation initiation factor 3 complex, nucleolus, helicase activity,
| details | CFinderM000879 | Alanine,_aspartate_and_glutamate_metabolism GNAT Transcription_Regulator(from iTAK) protein retention in ER lumen, nitrogen compound metabolic process, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, ER retention sequence binding, N-acetyltransferase_activity
| details | CFinderM000944 | TKL-Pl-6 (from iTAK) Ubiquitin_mediated_proteolysis
| details | CFinderM000970 | Protein_processing_in_endoplasmic_reticulum C3H Transcription_Regulator(from PlantTFDB) RNA_transport
| details | CFinderM000971 | C3H Transcription_Regulator(from PlantTFDB) regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity RNA_transport
| details | CFinderM001272 | | details | CFinderM001451 | Protein_processing_in_endoplasmic_reticulum Protein_export mitosis, protein retention in ER lumen, ER retention sequence binding, spliceosomal complex, glycerol ether metabolic process, isomerase activity,
| details | CFinderM001522 | SNF2 Transcription_Regulator(from iTAK) nucleolus, nuclear pore, RNA_transport
| details | CFinderM001554 | protein retention in ER lumen, ER retention sequence binding, peptidyl-prolyl cis-trans isomerase activity, acid-amino acid ligase activity,
| details | CFinderM001555 | protein retention in ER lumen, RLK-Pelle_DLSV (from iTAK) ER retention sequence binding,
| details | CFinderM001580 | iron-sulfur cluster assembly, RNA processing,
| details | CFinderM001739 | mannose biosynthetic process, phosphomannomutase activity, ARF Transcription_Regulator(from PlantTFDB) SNF2 Transcription_Regulator(from iTAK) B3-ARF Transcription_Regulator(from iTAK)
| details | CFinderM001798 | proton-transporting V-type ATPase, V0 domain, proton-transporting two-sector ATPase complex, proton-transporting domain, ATP hydrolysis coupled proton transport, Phagosome Oxidative_phosphorylation
| details |
4.Expression profilings |