CFinderM001678's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     

Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
mRNA_cleavage_and_polyadenylation_specificity_factor_complex0.009075425GO:0005847
mRNA cleavage,0.016295424GO:0006379
protein retention in ER lumen,0.016295424GO:0006621
mRNA_polyadenylation0.016295424GO:0006378
RNA metabolic process,0.043307393GO:0016070
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity0.043307393GO:0000079
ER retention sequence binding,0.048886272GO:0046923

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000812G0040Predicted eukaryotic LigTAT3G16230 (5.70E-52)
PH01001121G0400endoplasmic reticulum retention defective 2BAT3G25040 (2.40E-97)
PH01001235G0510Nucleoporin autopeptidaseAT1G10390 (4.00E-125)
PH01001376G0350Cyclin family proteinAT5G45190 (2.20E-82)
PH01001817G0340SMAD/FHA domain-containing protein AT5G47790 (3.00E-116)
PH01002177G0070ubiquitin-conjugating enzyme 35AT1G78870 (3.40E-58)
PH01002350G0160cleavage and polyadenylation specificity factor 100AT5G23880 (0.00E+00)
PH01003285G0110Uncharacterized protein family (UPF0016)AT5G36290 (1.30E-43)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000495SNF2 Transcription_Regulator(from iTAK)
proteasomal ubiquitin-dependent protein catabolic process,
nucleotide-excision repair,
ribosome biogenesis,
eukaryotic translation initiation factor 3 complex,
nucleolus,
helicase activity,
details
CFinderM000879Alanine,_aspartate_and_glutamate_metabolism
GNAT Transcription_Regulator(from iTAK)
protein retention in ER lumen,
nitrogen compound metabolic process,
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds,
ER retention sequence binding,
N-acetyltransferase_activity
details
CFinderM000944TKL-Pl-6 (from iTAK)
Ubiquitin_mediated_proteolysis
details
CFinderM000970Protein_processing_in_endoplasmic_reticulum
C3H Transcription_Regulator(from PlantTFDB)
RNA_transport
details
CFinderM000971C3H Transcription_Regulator(from PlantTFDB)
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
RNA_transport
details
CFinderM001272details
CFinderM001451Protein_processing_in_endoplasmic_reticulum
Protein_export
mitosis,
protein retention in ER lumen,
ER retention sequence binding,
spliceosomal complex,
glycerol ether metabolic process,
isomerase activity,
details
CFinderM001522SNF2 Transcription_Regulator(from iTAK)
nucleolus,
nuclear pore,
RNA_transport
details
CFinderM001554protein retention in ER lumen,
ER retention sequence binding,
peptidyl-prolyl cis-trans isomerase activity,
acid-amino acid ligase activity,
details
CFinderM001555protein retention in ER lumen,
RLK-Pelle_DLSV (from iTAK)
ER retention sequence binding,
details
CFinderM001580iron-sulfur cluster assembly,
RNA processing,
details
CFinderM001739mannose biosynthetic process,
phosphomannomutase activity,
ARF Transcription_Regulator(from PlantTFDB)
SNF2 Transcription_Regulator(from iTAK)
B3-ARF Transcription_Regulator(from iTAK)
details
CFinderM001798proton-transporting V-type ATPase, V0 domain,
proton-transporting two-sector ATPase complex, proton-transporting domain,
ATP hydrolysis coupled proton transport,
Phagosome
Oxidative_phosphorylation
details

4.Expression profilings