1.Module annotation (GSEA enrichment result) Function Annotation | FDR | Gene Ontolog | ribosome biogenesis, | 0.005426803 | GO:0042254 | nucleolus, | 0.012355481 | GO:0005730 | eukaryotic translation initiation factor 3 complex, | 0.012355481 | GO:0005852 | RNA_transport | 0.029453253 | KEGG |
2.Module member annotation Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | PH01000096G0370 | Pentatricopeptide repeat (PPR) superfamily protein | AT5G61990 (4.00E-118) | PH01000426G0150 | pescadillo-related | AT5G14520 (0.00E+00) | PH01000541G0540 | eukaryotic translation initiation factor 3E | AT3G57290 (3.00E-174) | PH01000624G0580 | zinc ion binding | AT1G12470 (6.00E-164) | PH01000750G0240 | ubiquitin-protein ligases | AT2G39810 (4.80E-92) | PH01003492G0050 | A20/AN1-like zinc finger family protein | AT1G12440 (2.30E-36) |
3.Direct connection functional modules Module ID | Function Annotation | Overlap condition | CFinderM000495 | SNF2 Transcription_Regulator(from iTAK) proteasomal ubiquitin-dependent protein catabolic process, nucleotide-excision repair, ribosome biogenesis, eukaryotic translation initiation factor 3 complex, nucleolus, helicase activity,
| details | CFinderM000544 | | details | CFinderM001160 | TLK (from iTAK) cell_cortex
| details | CFinderM001231 | cullin-RING ubiquitin ligase complex, RNA modification, ubiquitin-dependent protein catabolic process,
| details | CFinderM001310 | mRNA_surveillance_pathway binding,
| details | CFinderM001444 | nucleolus, SNARE_interactions_in_vesicular_transport Homologous_recombination SOS_response DNA metabolic process, ribosome biogenesis, single-stranded DNA binding, DNA-dependent ATPase activity,
| details | CFinderM001492 | mitochondrial inner membrane, mitochondrial inner membrane presequence translocase complex, nucleolus, Ubiquitin_mediated_proteolysis ribosome biogenesis,
| details | CFinderM001522 | SNF2 Transcription_Regulator(from iTAK) nucleolus, nuclear pore, RNA_transport
| details | CFinderM001527 | PHD Transcription_Regulator(from iTAK) guanyl-nucleotide exchange factor activity,
| details | CFinderM001554 | protein retention in ER lumen, ER retention sequence binding, peptidyl-prolyl cis-trans isomerase activity, acid-amino acid ligase activity,
| details | CFinderM001580 | iron-sulfur cluster assembly, RNA processing,
| details | CFinderM001695 | C3H Transcription_Regulator(from PlantTFDB) DNA photolyase activity,
| details | CFinderM001732 | | details | CFinderM001803 | spliceosomal complex, mitosis, Spliceosome protein dephosphorylation,
| details | CFinderM001810 | mitosis, spliceosomal complex, Spliceosome
| details |
4.Expression profilings |