CFinderM001702's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     

Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
ribosome biogenesis,0.005426803GO:0042254
nucleolus,0.012355481GO:0005730
eukaryotic translation initiation factor 3 complex,0.012355481GO:0005852
RNA_transport0.029453253KEGG

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000096G0370Pentatricopeptide repeat (PPR) superfamily proteinAT5G61990 (4.00E-118)
PH01000426G0150pescadillo-relatedAT5G14520 (0.00E+00)
PH01000541G0540eukaryotic translation initiation factor 3EAT3G57290 (3.00E-174)
PH01000624G0580zinc ion bindingAT1G12470 (6.00E-164)
PH01000750G0240ubiquitin-protein ligasesAT2G39810 (4.80E-92)
PH01003492G0050A20/AN1-like zinc finger family proteinAT1G12440 (2.30E-36)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000495SNF2 Transcription_Regulator(from iTAK)
proteasomal ubiquitin-dependent protein catabolic process,
nucleotide-excision repair,
ribosome biogenesis,
eukaryotic translation initiation factor 3 complex,
nucleolus,
helicase activity,
details
CFinderM000544details
CFinderM001160TLK (from iTAK)
cell_cortex

details
CFinderM001231cullin-RING ubiquitin ligase complex,
RNA modification,
ubiquitin-dependent protein catabolic process,
details
CFinderM001310mRNA_surveillance_pathway
binding,
details
CFinderM001444nucleolus,
SNARE_interactions_in_vesicular_transport
Homologous_recombination
SOS_response
DNA metabolic process,
ribosome biogenesis,
single-stranded DNA binding,
DNA-dependent ATPase activity,
details
CFinderM001492mitochondrial inner membrane,
mitochondrial inner membrane presequence translocase complex,
nucleolus,
Ubiquitin_mediated_proteolysis
ribosome biogenesis,
details
CFinderM001522SNF2 Transcription_Regulator(from iTAK)
nucleolus,
nuclear pore,
RNA_transport
details
CFinderM001527PHD Transcription_Regulator(from iTAK)
guanyl-nucleotide exchange factor activity,
details
CFinderM001554protein retention in ER lumen,
ER retention sequence binding,
peptidyl-prolyl cis-trans isomerase activity,
acid-amino acid ligase activity,
details
CFinderM001580iron-sulfur cluster assembly,
RNA processing,
details
CFinderM001695C3H Transcription_Regulator(from PlantTFDB)
DNA photolyase activity,
details
CFinderM001732details
CFinderM001803spliceosomal complex,
mitosis,
Spliceosome
protein dephosphorylation,
details
CFinderM001810mitosis,
spliceosomal complex,
Spliceosome
details

4.Expression profilings