1.Module annotation (GSEA enrichment result) Function Annotation | FDR | Gene Ontolog | Lysine_degradation | 0.005986793 | KEGG | SET Transcription_Regulator(from iTAK) | 0.009341217 | GFam | histone_methylation | 0.010307504 | GO:0016571 | histone_lysine_methylation | 0.011327628 | GO:0034968 | chloroplast, | 0.01907992 | GO:0009507 | histone-lysine N-methyltransferase activity, | 0.044163943 | GO:0018024 | histone_binding | 0.044163943 | GO:0042393 | ubiquitin-dependent protein catabolic process, | 0.046269678 | GO:0006511 |
2.Module member annotation Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | PH01000056G1510 | ubiquitin-specific protease 24 | AT4G30890 (7.00E-126) | PH01000556G0480 | SU(VAR)3-9 homolog 1 | AT5G04940 (1.00E-157) | PH01000696G0080 | Plastid-lipid associated protein PAP / fibrillin family protein | AT5G09820 (8.40E-55) | PH01002341G0180 | - | AT4G22320 (3.10E-19) | PH01003898G0120 | ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein | AT4G24690 (1.60E-57) | PH01023929G0010 | cleavage and polyadenylation specificity factor 73-I | AT1G61010 (0.00E+00) |
3.Direct connection functional modules Module ID | Function Annotation | Overlap condition | CFinderM000008 | TKL-Pl-4 (from iTAK) RLK-Pelle_RLCK-VIIa-2 (from iTAK) transferase activity, transferring phosphorus-containing groups, protein phosphorylation, Spliceosome protein kinase activity, ATP binding, protein serine/threonine kinase activity, exocyst, chloroplast,
| details | CFinderM000118 | | details | CFinderM000163 | SET Transcription_Regulator(from iTAK) histone_methylation histone_lysine_methylation nucleus, RNA-directed RNA polymerase activity, zinc ion binding, histone_binding histone-lysine N-methyltransferase activity,
| details | CFinderM000236 | NAK (from iTAK) STAT Transcription_Regulator(from PlantTFDB) Glycine,_serine_and_threonine_metabolism magnesium_ion_transport TKL-Pl-5 (from iTAK) magnesium_ion_transmembrane_transporter_activity
| details | CFinderM000323 | Diterpenoid_biosynthesis Lysine_degradation SET Transcription_Regulator(from iTAK) histone_methylation electron carrier activity, heme binding, oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, iron ion binding, histone_lysine_methylation histone_binding histone-lysine N-methyltransferase activity, oxidation-reduction process,
| details | CFinderM000947 | protein import into nucleus, nucleobase-containing compound metabolic process, Ribosome_biogenesis_in_eukaryotes
| details | CFinderM001014 | SET Transcription_Regulator(from iTAK) endoplasmic reticulum, nucleus, ubiquitin ligase complex, histone_methylation
| details | CFinderM001101 | SET Transcription_Regulator(from iTAK) histone_methylation histone_lysine_methylation Lysine_degradation nucleus, ubiquitin ligase complex, histone-lysine N-methyltransferase activity, histone_binding RNA_degradation transcription, DNA-dependent, protein ubiquitination,
| details | CFinderM001362 | Protein_processing_in_endoplasmic_reticulum mannose biosynthetic process, Lysine_degradation SET Transcription_Regulator(from iTAK) histone_methylation phosphomannomutase activity, histone_lysine_methylation
| details | CFinderM001488 | STAT Transcription_Regulator(from PlantTFDB) TKL-Pl-5 (from iTAK) Lysine_degradation nucleus, chloroplast, SET Transcription_Regulator(from iTAK) histone_methylation mRNA processing, histone_lysine_methylation
| details | CFinderM001521 | Lipoic_acid_metabolism NAK (from iTAK) AP2/ERF-AP2 Transcription_Regulator(from iTAK) chloroplast, AP2 Transcription_Regulator(from PlantTFDB) lipoate biosynthetic process, RNA-directed RNA polymerase activity, lipoate synthase activity,
| details | CFinderM001742 | GT31 GlycosylTransferases Basal_transcription_factors fatty-acyl-CoA binding, TBP-class_protein_binding ubiquitin-dependent protein catabolic process, protein glycosylation, galactosyltransferase activity, ubiquitin thiolesterase activity,
| details |
4.Expression profilings |