CFinderM001705's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     

Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
Lysine_degradation0.005986793KEGG
SET Transcription_Regulator(from iTAK)0.009341217GFam
histone_methylation0.010307504GO:0016571
histone_lysine_methylation0.011327628GO:0034968
chloroplast,0.01907992GO:0009507
histone-lysine N-methyltransferase activity,0.044163943GO:0018024
histone_binding0.044163943GO:0042393
ubiquitin-dependent protein catabolic process,0.046269678GO:0006511

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000056G1510ubiquitin-specific protease 24AT4G30890 (7.00E-126)
PH01000556G0480SU(VAR)3-9 homolog 1AT5G04940 (1.00E-157)
PH01000696G0080Plastid-lipid associated protein PAP / fibrillin family proteinAT5G09820 (8.40E-55)
PH01002341G0180-AT4G22320 (3.10E-19)
PH01003898G0120ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing proteinAT4G24690 (1.60E-57)
PH01023929G0010cleavage and polyadenylation specificity factor 73-IAT1G61010 (0.00E+00)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000008TKL-Pl-4 (from iTAK)
RLK-Pelle_RLCK-VIIa-2 (from iTAK)
transferase activity, transferring phosphorus-containing groups,
protein phosphorylation,
Spliceosome
protein kinase activity,
ATP binding,
protein serine/threonine kinase activity,
exocyst,
chloroplast,
details
CFinderM000118details
CFinderM000163SET Transcription_Regulator(from iTAK)
histone_methylation
histone_lysine_methylation
nucleus,
RNA-directed RNA polymerase activity,
zinc ion binding,
histone_binding
histone-lysine N-methyltransferase activity,
details
CFinderM000236NAK (from iTAK)
STAT Transcription_Regulator(from PlantTFDB)
Glycine,_serine_and_threonine_metabolism
magnesium_ion_transport
TKL-Pl-5 (from iTAK)
magnesium_ion_transmembrane_transporter_activity
details
CFinderM000323Diterpenoid_biosynthesis
Lysine_degradation
SET Transcription_Regulator(from iTAK)
histone_methylation
electron carrier activity,
heme binding,
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen,
iron ion binding,
histone_lysine_methylation
histone_binding
histone-lysine N-methyltransferase activity,
oxidation-reduction process,
details
CFinderM000947protein import into nucleus,
nucleobase-containing compound metabolic process,
Ribosome_biogenesis_in_eukaryotes
details
CFinderM001014SET Transcription_Regulator(from iTAK)
endoplasmic reticulum,
nucleus,
ubiquitin ligase complex,
histone_methylation
details
CFinderM001101SET Transcription_Regulator(from iTAK)
histone_methylation
histone_lysine_methylation
Lysine_degradation
nucleus,
ubiquitin ligase complex,
histone-lysine N-methyltransferase activity,
histone_binding
RNA_degradation
transcription, DNA-dependent,
protein ubiquitination,
details
CFinderM001362Protein_processing_in_endoplasmic_reticulum
mannose biosynthetic process,
Lysine_degradation
SET Transcription_Regulator(from iTAK)
histone_methylation
phosphomannomutase activity,
histone_lysine_methylation
details
CFinderM001488STAT Transcription_Regulator(from PlantTFDB)
TKL-Pl-5 (from iTAK)
Lysine_degradation
nucleus,
chloroplast,
SET Transcription_Regulator(from iTAK)
histone_methylation
mRNA processing,
histone_lysine_methylation
details
CFinderM001521Lipoic_acid_metabolism
NAK (from iTAK)
AP2/ERF-AP2 Transcription_Regulator(from iTAK)
chloroplast,
AP2 Transcription_Regulator(from PlantTFDB)
lipoate biosynthetic process,
RNA-directed RNA polymerase activity,
lipoate synthase activity,
details
CFinderM001742GT31 GlycosylTransferases
Basal_transcription_factors
fatty-acyl-CoA binding,
TBP-class_protein_binding
ubiquitin-dependent protein catabolic process,
protein glycosylation,
galactosyltransferase activity,
ubiquitin thiolesterase activity,
details

4.Expression profilings