|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | phosphoribosyl-AMP cyclohydrolase activity, | 0.020134769 | GO:0004635 | | histidine biosynthetic process, | 0.032583642 | GO:0000105 | | RNA modification, | 0.032583642 | GO:0009451 | | pseudouridine synthesis, | 0.032583642 | GO:0001522 | | nuclear pore, | 0.036924907 | GO:0005643 |
2.Module member annotation
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000144 | protein binding,
acid-amino acid ligase activity,
| details | | CFinderM000408 | Group-Pl-3 (from iTAK)
histidine_catabolic_process_to_glutamate_and_formamide
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides,
| details | | CFinderM000587 | protein binding,
acid-amino acid ligase activity,
| details | | CFinderM000691 | ornithine carbamoyltransferase activity,
phosphoribosyl-AMP cyclohydrolase activity,
ornithine_metabolic_process
carboxyl- or carbamoyltransferase activity,
histone deacetylase activity,
histone deacetylation,
Histidine_metabolism
histidine biosynthetic process,
Arginine_and_proline_metabolism
cellular amino acid metabolic process,
cellular protein metabolic process,
amino acid binding,
| details | | CFinderM000717 | tRNA processing,
| details | | CFinderM000940 | nucleic acid binding,
Ribosome_biogenesis_in_eukaryotes
| details | | CFinderM000995 | nucleus,
riboflavin kinase activity,
RLK-Pelle_LRR-II (from iTAK)
B3-ARF Transcription_Regulator(from iTAK)
ARF Transcription_Regulator(from PlantTFDB)
Riboflavin_metabolism
DNA_replication
Mismatch_repair
Nucleotide_excision_repair
riboflavin biosynthetic process,
response to hormone stimulus,
| details | | CFinderM001039 | acetyl-CoA carboxylase activity,
biotin_carboxylase_activity
Fatty_acid_biosynthesis
Propanoate_metabolism
Pyruvate_metabolism
cytokinesis
microtubule cytoskeleton organization,
ligase activity,
microtubule binding,
| details | | CFinderM001057 | RLK-Pelle_URK-1 (from iTAK)
NEK (from iTAK)
chromatin silencing at telomere,
chromatin modification,
histone acetylation,
| details | | CFinderM001079 | SOS_response
DNA metabolic process,
cellular protein metabolic process,
| details | | CFinderM001110 | Ubiquitin_mediated_proteolysis
acid-amino acid ligase activity,
protein neddylation,
cellular protein modification process,
small protein activating enzyme activity,
| details | | CFinderM001131 | | details | | CFinderM001149 | ketol-acid reductoisomerase activity,
branched chain family amino acid biosynthetic process,
cellular amino acid biosynthetic process,
SCY1_SCYL2 (from iTAK)
coenzyme binding,
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor,
Endocytosis
| details | | CFinderM001166 | DNA_replication
Nucleotide_excision_repair
Mismatch_repair
Riboflavin_metabolism
histone acetylation,
chromatin modification,
chromatin silencing at telomere,
| details | | CFinderM001414 | PHD Transcription_Regulator(from iTAK)
| details | | CFinderM001415 | PHD Transcription_Regulator(from iTAK)
| details | | CFinderM001452 | 'de novo' IMP biosynthetic process,
5-(carboxyamino)imidazole_ribonucleotide_mutase_activity
| details | | CFinderM001502 | SET Transcription_Regulator(from iTAK)
ribonucleoprotein complex,
nucleus,
histone_lysine_methylation
RNA processing,
| details | | CFinderM001510 | Ribosome_biogenesis_in_eukaryotes
RNA processing,
acid-amino acid ligase activity,
| details | | CFinderM001516 | Ribosome_biogenesis_in_eukaryotes
MYB_related Transcription_Regulator(from PlantTFDB)
MYB-related Transcription_Regulator(from iTAK)
| details | | CFinderM001517 | N-acetyl-gamma-glutamyl-phosphate reductase activity,
cellular amino acid biosynthetic process,
cellular amino acid metabolic process,
| details | | CFinderM001519 | | details | | CFinderM001544 | RLK-Pelle_LRR-VI-2 (from iTAK)
NF-YC Transcription_Regulator(from PlantTFDB)
nuclear pore,
RNA_transport
| details | | CFinderM001582 | cellular_homeostasis
Peroxisome
mitochondrial outer membrane,
protein methylation,
| details | | CFinderM001613 | RNA_degradation
| details | | CFinderM001719 | nuclear pore,
RNA modification,
pseudouridine synthesis,
pseudouridine synthase activity,
Ribosome_biogenesis_in_eukaryotes
RNA_transport
| details | | CFinderM001720 | RNA_polymerase_II_transcription_cofactor_activity
NAD+ ADP-ribosyltransferase activity,
mediator complex,
nuclear pore,
regulation of transcription from RNA polymerase II promoter,
protein transport,
| details | | CFinderM001758 | nuclear pore,
MYB-related Transcription_Regulator(from iTAK)
MYB_related Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001761 | large ribosomal subunit,
intracellular,
| details | | CFinderM001773 | Group-Pl-3 (from iTAK)
phosphoribosylformylglycinamidine cyclo-ligase activity,
'de novo' IMP biosynthetic process,
intracellular,
| details | | CFinderM001831 | | details | | CFinderM001832 | histone deacetylation,
Endocytosis
histone deacetylase activity,
cellular protein metabolic process,
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
NAD+ ADP-ribosyltransferase activity,
| details | | CFinderM001848 | Valine,_leucine_and_isoleucine_biosynthesis
C5-Branched_dibasic_acid_metabolism
SBP Transcription_Regulator(from PlantTFDB)
Pantothenate_and_CoA_biosynthesis
Butanoate_metabolism
branched chain family amino acid biosynthetic process,
acetolactate synthase activity,
| details | | CFinderM001882 | Valine,_leucine_and_isoleucine_biosynthesis
C5-Branched_dibasic_acid_metabolism
branched chain family amino acid biosynthetic process,
SBP Transcription_Regulator(from PlantTFDB)
Butanoate_metabolism
Pantothenate_and_CoA_biosynthesis
acetolactate synthase activity,
| details |
4.Expression profilings |
