CFinderM001723's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     

Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
Proteasome2.06E-06KEGG
proteolysis involved in cellular protein catabolic process,0.01493849GO:0051603
protein catabolic process,0.01493849GO:0030163
proteasome core complex,0.029876979GO:0005839
mRNA_surveillance_pathway0.043694548KEGG

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000013G1960RP non-ATPase subunit 8AAT5G05780 (8.00E-162)
PH01000106G0400RS2-interacting KH proteinAT3G29390 (2.00E-107)
PH01000159G0900-AT4G36980 (3.40E-28)
PH01000191G078020S proteasome beta subunit G1AT1G56450 (8.00E-102)
PH01000424G0060Integral membrane HRF1 family proteinAT1G30890 (9.00E-106)
PH01000515G0530-- (-)
PH01002719G0020protein phosphatase 2A-4AT3G58500 (2.00E-175)
PH01003192G0220regulatory particle triple-A 1AAT1G53750 (0.00E+00)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000496cullin-RING ubiquitin ligase complex,
ubiquitin protein ligase binding,
Pseudo ARR-B Transcription_Regulator(from iTAK)
ubiquitin-dependent protein catabolic process,
diphosphomevalonate decarboxylase activity,
L,L-diaminopimelate_aminotransferase_activity
Citrate_cycle_(TCA_cycle)
Pyruvate_metabolism
details
CFinderM000725Proteasome
ATP synthesis coupled proton transport,
protein catabolic process,
details
CFinderM000822protein binding,
Proteasome
details
CFinderM000984proteasome core complex,
threonine-type endopeptidase activity,
endopeptidase activity,
proteolysis involved in cellular protein catabolic process,
Proteasome
thiol oxidase activity,
proteasome core complex, alpha-subunit complex,
Oxidative_phosphorylation
details
CFinderM001065threonine-type endopeptidase activity,
endopeptidase activity,
proteasome core complex,
proteolysis involved in cellular protein catabolic process,
Proteasome
thiol oxidase activity,
Protein_processing_in_endoplasmic_reticulum
proteasome core complex, alpha-subunit complex,
Retinol_metabolism
details
CFinderM001397GT4 GlycosylTransferases
details
CFinderM001407threonine-type endopeptidase activity,
endopeptidase activity,
proteolysis involved in cellular protein catabolic process,
proteasome core complex,
Proteasome
RLK-Pelle_LRR-XIV (from iTAK)
Protein_processing_in_endoplasmic_reticulum
proteasome core complex, alpha-subunit complex,
Protein_export
details
CFinderM0017246-phosphofructokinase complex,
fructose_6-phosphate_metabolic_process
response to heat,
diphosphate-fructose-6-phosphate 1-phosphotransferase activity,
heat shock protein binding,
6-phosphofructokinase activity,
phospholipid binding,
details
CFinderM001748methionine metabolic process,
methylenetetrahydrofolate reductase (NADPH) activity,
One_carbon_pool_by_folate
Carbon_fixation_pathways_in_prokaryotes
Protein_export
details

4.Expression profilings