CFinderM001739's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
mannose biosynthetic process,0.008269267GO:0019307
phosphomannomutase activity,0.016476476GO:0004615
ARF Transcription_Regulator(from PlantTFDB)0.016784365GFam
SNF2 Transcription_Regulator(from iTAK)0.016784365GFam
B3-ARF Transcription_Regulator(from iTAK)0.016784365GFam

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000291G0340cAMP-regulated phosphoprotein 19-related proteinAT5G64130 (4.90E-33)
PH01000629G0150SNF2 domain-containing protein / helicase domain-containing proteinAT2G16390 (0.00E+00)
PH01001235G0510Nucleoporin autopeptidaseAT1G10390 (4.00E-125)
PH01001941G0300calnexin 1AT5G61790 (2.00E-168)
PH01002806G0200auxin response factor 2AT5G62000 (0.00E+00)
PH01005999G0020phosphomannomutaseAT2G45790 (1.70E-88)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000236NAK (from iTAK)
STAT Transcription_Regulator(from PlantTFDB)
Glycine,_serine_and_threonine_metabolism
magnesium_ion_transport
TKL-Pl-5 (from iTAK)
magnesium_ion_transmembrane_transporter_activity
details
CFinderM000387double-strand break repair,
DNA metabolic process,
endoplasmic reticulum,
details
CFinderM000495SNF2 Transcription_Regulator(from iTAK)
proteasomal ubiquitin-dependent protein catabolic process,
nucleotide-excision repair,
ribosome biogenesis,
eukaryotic translation initiation factor 3 complex,
nucleolus,
helicase activity,
details
CFinderM000591HB-other Transcription_Regulator(from PlantTFDB)
SNARE_interactions_in_vesicular_transport
WASH_complex
actin cytoskeleton,
spliceosomal complex,
pre-mRNA_intronic_binding
details
CFinderM001014SET Transcription_Regulator(from iTAK)
endoplasmic reticulum,
nucleus,
ubiquitin ligase complex,
histone_methylation
details
CFinderM001195nucleic acid binding,
ARF Transcription_Regulator(from PlantTFDB)
B3-ARF Transcription_Regulator(from iTAK)
C3H Transcription_Regulator(from PlantTFDB)
endoplasmic reticulum,
response to hormone stimulus,
glycerol ether metabolic process,
Protein_processing_in_endoplasmic_reticulum
details
CFinderM001272details
CFinderM001362Protein_processing_in_endoplasmic_reticulum
mannose biosynthetic process,
Lysine_degradation
SET Transcription_Regulator(from iTAK)
histone_methylation
phosphomannomutase activity,
histone_lysine_methylation
details
CFinderM001366sulfur compound metabolic process,
endoplasmic reticulum,
phosphatidylinositol phosphorylation,
3'(2'),5'-bisphosphate nucleotidase activity,
RLK-Pelle_DLSV (from iTAK)
Phosphatidylinositol_signaling_system
Inositol_phosphate_metabolism
Sulfur_metabolism
details
CFinderM001522SNF2 Transcription_Regulator(from iTAK)
nucleolus,
nuclear pore,
RNA_transport
details
CFinderM001678mRNA_cleavage_and_polyadenylation_specificity_factor_complex
mRNA cleavage,
protein retention in ER lumen,
mRNA_polyadenylation
RNA metabolic process,
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
ER retention sequence binding,
details

4.Expression profilings