|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | Terpenoid_backbone_biosynthesis | 0.009713348 | KEGG | | isoprenoid biosynthetic process, | 0.011777293 | GO:0008299 | | regulation of Rab GTPase activity, | 0.011777293 | GO:0032313 | | Rab GTPase activator activity, | 0.01963956 | GO:0005097 | | acid-amino acid ligase activity, | 0.022088586 | GO:0016881 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000031G1690 | Ypt/Rab-GAP domain of gyp1p superfamily protein | AT4G13730 (7.00E-143) | | PH01000297G0240 | farnesyl diphosphate synthase 1 | AT5G47770 (4.00E-139) | | PH01000605G0370 | SH3 domain-containing protein | AT4G18060 (1.00E-102) | | PH01001032G0100 | Chaperone DnaJ-domain superfamily protein | AT1G61770 (4.00E-123) | | PH01001659G0290 | phosducin-like protein 3 homolog | AT3G50960 (2.90E-50) | | PH01001968G0140 | MMS ZWEI homologue 1 | AT1G23260 (5.80E-60) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000048 | | details | | CFinderM000186 | acid-amino acid ligase activity,
| details | | CFinderM001030 | protein import into mitochondrial inner membrane,
RLK-Pelle_L-LEC (from iTAK)
protein methylation,
| details | | CFinderM001224 | regulation of Rab GTPase activity,
microtubule-based movement,
| details | | CFinderM001332 | protein import into mitochondrial inner membrane,
mitochondrial electron transport, ubiquinol to cytochrome c,
ubiquinol-cytochrome-c reductase activity,
mitochondrial proton-transporting ATP synthase complex, coupling factor F(o),
ATP synthesis coupled proton transport,
hydrogen ion transmembrane transporter activity,
| details | | CFinderM001467 | HMG Transcription_Regulator(from iTAK)
| details | | CFinderM001470 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
transcription factor TFIIF complex,
transcription from RNA polymerase II promoter,
transcription initiation from RNA polymerase II promoter,
L-phenylalanine biosynthetic process,
Basal_transcription_factors
prephenate dehydratase activity,
| details | | CFinderM001491 | 3,4-dihydroxy-2-butanone-4-phosphate synthase activity,
glucose-6-phosphate isomerase activity,
sterol_24-C-methyltransferase_activity
GTP cyclohydrolase II activity,
riboflavin biosynthetic process,
steroid biosynthetic process,
gluconeogenesis,
isoprenoid biosynthetic process,
| details | | CFinderM001530 | GT66 GlycosylTransferases
oligosaccharyl transferase activity,
regulation of Rab GTPase activity,
protein glycosylation,
Rab GTPase activator activity,
C2H2 Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001551 | carbohydrate phosphorylation,
galactokinase activity,
galactose metabolic process,
kinase activity,
| details | | CFinderM001774 | regulation of Rab GTPase activity,
Rab GTPase activator activity,
intracellular,
DNA metabolic process,
isoprenoid biosynthetic process,
nuclease activity,
Nucleotide_excision_repair
Terpenoid_backbone_biosynthesis
| details | | CFinderM001872 | 3,4-dihydroxy-2-butanone-4-phosphate synthase activity,
GTP cyclohydrolase II activity,
Riboflavin_metabolism
riboflavin biosynthetic process,
isoprenoid biosynthetic process,
nucleic acid binding,
Terpenoid_backbone_biosynthesis
| details |
4.Expression profilings |
