CFinderM001861's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     

Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
SNARE_interactions_in_vesicular_transport0.030874225KEGG
acid-amino acid ligase activity,0.044177173GO:0016881
Ubiquitin_mediated_proteolysis0.046269678KEGG
mRNA_surveillance_pathway0.046269678KEGG

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000067G0360cleavage and polyadenylation specificity factor 160AT5G51660 (0.00E+00)
PH01000086G1000Target SNARE coiled-coil domain proteinAT4G14600 (1.90E-17)
PH01000373G0800Protein of unknown function (DUF3414)AT4G38760 (3.90E-25)
PH01000496G0830Ubiquitin-conjugating enzyme family proteinAT1G45050 (3.10E-85)
PH01001450G0190Late embryogenesis abundant protein (LEA) family proteinAT3G62580 (1.30E-83)
PH01003376G0110Bax inhibitor-1 family proteinAT4G15470 (5.10E-83)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000671SET Transcription_Regulator(from iTAK)
DNA repair,
Base_excision_repair
nuclease activity,
Ubiquitin_mediated_proteolysis
details
CFinderM001077SNARE_interactions_in_vesicular_transport
details
CFinderM001146TKL-Pl-2 (from iTAK)
chromosome,
Homologous_recombination
DNA topological change,
DNA topoisomerase activity,
DNA topoisomerase type I activity,
details
CFinderM001204Mre11 complex,
nucleolus,
DNA repair,
details
CFinderM001315STE_STE-Pl (from iTAK)
details
CFinderM001399RNA_transport
Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
3-dehydroquinate synthase activity,
Base_excision_repair
details
CFinderM001463alpha-Linolenic_acid_metabolism
Fatty_acid_metabolism
GRAS Transcription_Regulator(from PlantTFDB)
fatty acid metabolic process,
3-hydroxyacyl-CoA_dehydrogenase_activity
details
CFinderM001527PHD Transcription_Regulator(from iTAK)
guanyl-nucleotide exchange factor activity,
details
CFinderM001659protein import into nucleus,
nuclear pore,
details
CFinderM001660SNARE_interactions_in_vesicular_transport
details
CFinderM001669CBM49 Carbohydrate-Binding_Modules
GH9 Glycoside_Hydrolases
phosphatidylinositol_dephosphorylation
details
CFinderM001730Alanine,_aspartate_and_glutamate_metabolism
TKL-Pl-2 (from iTAK)
carbamoyl_phosphate_biosynthetic_process
glutamine_catabolic_process
clathrin_coat
clathrin_coat_assembly
Pyrimidine_metabolism
bZIP Transcription_Regulator(from PlantTFDB)
details
CFinderM001752spindle pole,
microtubule organizing center,
STE_STE11 (from iTAK)
microtubule cytoskeleton organization,
mRNA_surveillance_pathway
details
CFinderM001767RLK-Pelle_PERK-1 (from iTAK)
RNA methylation,
nucleoside transmembrane transporter activity,
carboxyl- or carbamoyltransferase activity,
RNA methyltransferase activity,
O-methyltransferase activity,
RNA_transport
cellular amino acid metabolic process,
amino acid binding,
details
CFinderM001779pseudouridine synthesis,
RNA modification,
RNA binding,
binding,
pseudouridine synthase activity,
details
CFinderM001839GPI anchor metabolic process,
DNA methylation,
DNA recombination,
Base_excision_repair
Ubiquitin_mediated_proteolysis
details
CFinderM001856GPI anchor metabolic process,
Base_excision_repair
nuclease activity,
details
CFinderM001869DNA recombination,
(1->3)-beta-D-glucan biosynthetic process,
1,3-beta-D-glucan synthase complex,
Ubiquitin_mediated_proteolysis
details
CFinderM001888Alanine,_aspartate_and_glutamate_metabolism
carbamoyl_phosphate_biosynthetic_process
glutamine_catabolic_process
clathrin_coat_assembly
clathrin_coat
1-phosphatidylinositol_binding
clathrin_binding
phospholipid binding,
Pyrimidine_metabolism
cell redox homeostasis,
details
CFinderM001890clathrin_coat_assembly
clathrin_coat
1-phosphatidylinositol_binding
clathrin_binding
RNA_degradation
regulation of transcription, DNA-dependent,
phospholipid binding,
details

4.Expression profilings