CFinderM001872's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     

Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
3,4-dihydroxy-2-butanone-4-phosphate synthase activity,0.004209358GO:0008686
GTP cyclohydrolase II activity,0.004209358GO:0003935
Riboflavin_metabolism0.015625965KEGG
riboflavin biosynthetic process,0.020426292GO:0009231
isoprenoid biosynthetic process,0.025173411GO:0008299
nucleic acid binding,0.0285888GO:0003676
Terpenoid_backbone_biosynthesis0.031137881KEGG

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000005G2020-- (-)
PH01000021G2480Single-stranded nucleic acid binding R3H proteinAT2G40960 (2.30E-58)
PH01000297G0240farnesyl diphosphate synthase 1AT5G47770 (4.00E-139)
PH01001174G0310PDI-like 1-5AT1G52260 (2.00E-144)
PH01001412G0460GTP cyclohydrolase IIAT5G64300 (0.00E+00)
PH01001998G0070Single-stranded nucleic acid binding R3H proteinAT2G40960 (3.30E-57)
PH01002889G0070auxin signaling F-box 2AT3G26810 (0.00E+00)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000697Valine,_leucine_and_isoleucine_biosynthesis
Valine,_leucine_and_isoleucine_degradation
details
CFinderM001050SNARE_interactions_in_vesicular_transport
details
CFinderM001285PcG_protein_complex
cation:chloride_symporter_activity
SET Transcription_Regulator(from iTAK)
cytoskeleton,
ion transport,
details
CFinderM001312metalloendopeptidase activity,
Riboflavin_metabolism
6-phosphofructokinase complex,
GTP cyclohydrolase II activity,
catalytic activity,
3,4-dihydroxy-2-butanone-4-phosphate synthase activity,
proteolysis,
riboflavin biosynthetic process,
metallopeptidase activity,
6-phosphofructokinase activity,
glycolysis,
details
CFinderM001368Protein_processing_in_endoplasmic_reticulum
cell redox homeostasis,
endoplasmic reticulum,
details
CFinderM001443Fatty_acid_biosynthesis
3-oxoacyl-[acyl-carrier-protein] synthase activity,
translational termination,
mRNA_surveillance_pathway
translation release factor activity, codon specific,
lipid biosynthetic process,
details
CFinderM001476RLK-Pelle_RLCK-V (from iTAK)
spermine biosynthetic process,
spermidine biosynthetic process,
cytoskeleton,
Cysteine_and_methionine_metabolism
Arginine_and_proline_metabolism
microtubule associated complex,
adenosylmethionine decarboxylase activity,
details
CFinderM0014913,4-dihydroxy-2-butanone-4-phosphate synthase activity,
glucose-6-phosphate isomerase activity,
sterol_24-C-methyltransferase_activity
GTP cyclohydrolase II activity,
riboflavin biosynthetic process,
steroid biosynthetic process,
gluconeogenesis,
isoprenoid biosynthetic process,
details
CFinderM001503methyltransferase activity,
DNA metabolic process,
nuclease activity,
MYB-related Transcription_Regulator(from iTAK)
MYB_related Transcription_Regulator(from PlantTFDB)
cell redox homeostasis,
Nucleotide_excision_repair
details
CFinderM001696phenylalanyl-tRNA aminoacylation,
microtubule,
mitochondrial outer membrane,
protein complex,
Fatty_acid_metabolism
Peroxisome
Aminoacyl-tRNA_biosynthesis
phenylalanine-tRNA ligase activity,
tRNA aminoacylation,
protein polymerization,
microtubule-based process,
tRNA binding,
details
CFinderM001768regulation of Rab GTPase activity,
Rab GTPase activator activity,
intracellular,
Nucleotide_excision_repair
G-protein coupled receptor signaling pathway,
DNA metabolic process,
guanyl nucleotide binding,
G-protein_beta/gamma-subunit_complex_binding
nuclease activity,
details
CFinderM001771Terpenoid_backbone_biosynthesis
isoprenoid biosynthetic process,
regulation of Rab GTPase activity,
Rab GTPase activator activity,
acid-amino acid ligase activity,
details
CFinderM001774regulation of Rab GTPase activity,
Rab GTPase activator activity,
intracellular,
DNA metabolic process,
isoprenoid biosynthetic process,
nuclease activity,
Nucleotide_excision_repair
Terpenoid_backbone_biosynthesis
details
CFinderM001867Pseudo ARR-B Transcription_Regulator(from iTAK)
Riboflavin_metabolism
GTP cyclohydrolase II activity,
3,4-dihydroxy-2-butanone-4-phosphate synthase activity,
mRNA_surveillance_pathway
riboflavin biosynthetic process,
protein catabolic process,
two-component signal transduction system (phosphorelay),
details
CFinderM001894AGC_NDR (from iTAK)
Golgi apparatus,
membrane coat,
clathrin adaptor complex,
nucleic acid binding,
details
CFinderM001895phenylalanyl-tRNA aminoacylation,
mitochondrial outer membrane,
Aminoacyl-tRNA_biosynthesis
tRNA aminoacylation,
phenylalanine-tRNA ligase activity,
tRNA binding,
details

4.Expression profilings