|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | histone deacetylation, | 0.004498523 | GO:0016575 | | histone deacetylase activity, | 0.01711938 | GO:0004407 | | DNA_replication | 0.022237161 | KEGG | | Mismatch_repair | 0.022237161 | KEGG | | Nucleotide_excision_repair | 0.022237161 | KEGG | | DNA_replication | 0.024310209 | KEGG |
2.Module member annotation
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000069 | Ribosome_biogenesis_in_eukaryotes
Ino80_complex
ATP-dependent_5'-3'_DNA_helicase_activity
rRNA (adenine-N6,N6-)-dimethyltransferase activity,
rRNA methyltransferase activity,
rRNA (adenine) methyltransferase activity,
snoRNA binding,
snRNA_pseudouridine_synthesis
rRNA modification,
| details | | CFinderM000196 | SCY1_SCYL2 (from iTAK)
phosphatidylinositol phosphorylation,
ubiquitin ligase complex,
protein ubiquitination,
binding,
| details | | CFinderM000204 | CMGC_CLK (from iTAK)
histone deacetylation,
ubiquitin ligase complex,
histone deacetylase activity,
| details | | CFinderM000341 | exosome_(RNase_complex)
COP9_signalosome
| details | | CFinderM000457 | SCY1_SCYL2 (from iTAK)
| details | | CFinderM000463 | exosome_(RNase_complex)
RNA_degradation
| details | | CFinderM000470 | SCY1_SCYL2 (from iTAK)
| details | | CFinderM000691 | ornithine carbamoyltransferase activity,
phosphoribosyl-AMP cyclohydrolase activity,
ornithine_metabolic_process
carboxyl- or carbamoyltransferase activity,
histone deacetylase activity,
histone deacetylation,
Histidine_metabolism
histidine biosynthetic process,
Arginine_and_proline_metabolism
cellular amino acid metabolic process,
cellular protein metabolic process,
amino acid binding,
| details | | CFinderM000692 | CMGC_CLK (from iTAK)
ornithine_metabolic_process
histone deacetylation,
ornithine carbamoyltransferase activity,
carboxyl- or carbamoyltransferase activity,
histone deacetylase activity,
Arginine_and_proline_metabolism
cellular amino acid metabolic process,
| details | | CFinderM000693 | ornithine_metabolic_process
histone deacetylation,
protein import into nucleus,
ornithine carbamoyltransferase activity,
carboxyl- or carbamoyltransferase activity,
histone deacetylase activity,
Arginine_and_proline_metabolism
cellular amino acid metabolic process,
protein transporter activity,
amino acid binding,
| details | | CFinderM000696 | snRNA_pseudouridine_synthesis
snoRNA binding,
ribosome biogenesis,
MYB_related Transcription_Regulator(from PlantTFDB)
| details | | CFinderM000745 | GMP synthase (glutamine-hydrolyzing) activity,
pyrophosphatase_activity
CMGC_GSK (from iTAK)
protein-arginine_deiminase_activity
| details | | CFinderM000909 | Homologous_recombination
DNA_replication
Mismatch_repair
histone-lysine N-methyltransferase activity,
single-stranded DNA binding,
Golgi vesicle transport,
| details | | CFinderM000995 | nucleus,
riboflavin kinase activity,
RLK-Pelle_LRR-II (from iTAK)
B3-ARF Transcription_Regulator(from iTAK)
ARF Transcription_Regulator(from PlantTFDB)
Riboflavin_metabolism
DNA_replication
Mismatch_repair
Nucleotide_excision_repair
riboflavin biosynthetic process,
response to hormone stimulus,
| details | | CFinderM001019 | protein transport,
| details | | CFinderM001068 | protein import into nucleus,
histone deacetylation,
RLK-Pelle_RLCK-VIIa-2 (from iTAK)
histone deacetylase activity,
| details | | CFinderM001105 | Endocytosis
pseudouridine synthesis,
RNA modification,
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
protein_kinase_binding
pseudouridine synthase activity,
| details | | CFinderM001106 | Endocytosis
| details | | CFinderM001367 | histone deacetylation,
protein import into nucleus,
RLK-Pelle_RLCK-VIIa-2 (from iTAK)
histone deacetylase activity,
| details | | CFinderM001493 | ARID Transcription_Regulator(from iTAK)
magnesium_ion_transport
magnesium_ion_transmembrane_transporter_activity
| details | | CFinderM001583 | endoplasmic reticulum,
bZIP Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001584 | | details | | CFinderM001832 | histone deacetylation,
Endocytosis
histone deacetylase activity,
cellular protein metabolic process,
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
NAD+ ADP-ribosyltransferase activity,
| details | | CFinderM001850 | lipid metabolic process,
| details |
4.Expression profilings |
