1.Module annotation (GSEA enrichment result) Function Annotation | FDR | Gene Ontolog | AGC_NDR (from iTAK) | 0.00174918 | GFam | Golgi apparatus, | 0.004812049 | GO:0005794 | membrane coat, | 0.013595842 | GO:0030117 | clathrin adaptor complex, | 0.013595842 | GO:0030131 | nucleic acid binding, | 0.024948406 | GO:0003676 |
2.Module member annotation Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | PH01000036G0740 | Adaptor protein complex AP-1, gamma subunit | AT1G60070 (0.00E+00) | PH01000110G0290 | AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein | AT2G20470 (5.00E-125) | PH01000132G0780 | F-box and associated interaction domains-containing protein | AT3G10240 (1.80E-09) | PH01000240G0240 | Ubiquitin-like superfamily protein | AT4G01000 (3.40E-29) | PH01001998G0070 | Single-stranded nucleic acid binding R3H protein | AT2G40960 (3.30E-57) | PH01002557G0220 | oligouridylate binding protein 1B | AT1G17370 (2.00E-158) | PH01004743G0110 | DYNAMIN-like 1C | AT1G14830 (0.00E+00) |
3.Direct connection functional modules Module ID | Function Annotation | Overlap condition | CFinderM000139 | metabolic process, transferase activity, transferring hexosyl groups, cysteine metabolic process, phenylalanyl-tRNA aminoacylation, cysteine desulfurase activity, phenylalanine-tRNA ligase activity,
| details | CFinderM000875 | membrane, cellulose biosynthetic process, cellulose synthase (UDP-forming) activity, acetylglucosaminyltransferase activity, ubiquitin thiolesterase activity, ubiquitin-dependent protein catabolic process,
| details | CFinderM000876 | GTPase activity, GTP binding, cellulose biosynthetic process, ubiquitin-dependent protein catabolic process, cellulose synthase (UDP-forming) activity, ubiquitin thiolesterase activity, structural molecule activity,
| details | CFinderM001049 | microtubule associated complex, microtubule-based movement, microtubule motor activity, PcG_protein_complex F-actin capping protein complex, Sesquiterpenoid_and_triterpenoid_biosynthesis spindle pole, WASH_complex microtubule organizing center, DNA polymerase III complex, RLK-Pelle_RLCK-V (from iTAK) CK1_CK1 (from iTAK) Pantothenate_and_CoA_biosynthesis macromolecule biosynthetic process,
| details | CFinderM001050 | SNARE_interactions_in_vesicular_transport
| details | CFinderM001290 | Protein_processing_in_endoplasmic_reticulum AGC_NDR (from iTAK)
| details | CFinderM001443 | Fatty_acid_biosynthesis 3-oxoacyl-[acyl-carrier-protein] synthase activity, translational termination, mRNA_surveillance_pathway translation release factor activity, codon specific, lipid biosynthetic process,
| details | CFinderM001476 | RLK-Pelle_RLCK-V (from iTAK) spermine biosynthetic process, spermidine biosynthetic process, cytoskeleton, Cysteine_and_methionine_metabolism Arginine_and_proline_metabolism microtubule associated complex, adenosylmethionine decarboxylase activity,
| details | CFinderM001626 | Golgi apparatus, membrane coat, clathrin adaptor complex, Amino_sugar_and_nucleotide_sugar_metabolism Starch_and_sucrose_metabolism
| details | CFinderM001647 | phenylalanyl-tRNA aminoacylation, phenylalanine-tRNA ligase activity, tRNA binding, tRNA aminoacylation, Aminoacyl-tRNA_biosynthesis aminoacyl-tRNA ligase activity, fumarate metabolic process, nucleotide binding, magnesium ion binding, tricarboxylic acid cycle enzyme complex, fumarate hydratase activity, cytoplasm, mitochondrial outer membrane, RNA binding, tricarboxylic acid cycle, Carbon_fixation_pathways_in_prokaryotes Citrate_cycle_(TCA_cycle) lyase activity,
| details | CFinderM001747 | NAK (from iTAK) Sulfur_relay_system Thiamine_metabolism Golgi apparatus, cysteine metabolic process, membrane coat, clathrin adaptor complex, cysteine desulfurase activity, regulation of ARF protein signal transduction, cytoskeleton organization, ARF guanyl-nucleotide exchange factor activity,
| details | CFinderM001775 | myosin complex, TBP-class_protein_binding Fructose_and_mannose_metabolism Basal_transcription_factors Amino_sugar_and_nucleotide_sugar_metabolism motor activity,
| details | CFinderM001825 | GT66 GlycosylTransferases cation:chloride_symporter_activity oligosaccharyl transferase activity, spindle pole, microtubule organizing center, microtubule cytoskeleton organization, ion transport,
| details | CFinderM001872 | 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, GTP cyclohydrolase II activity, Riboflavin_metabolism riboflavin biosynthetic process, isoprenoid biosynthetic process, nucleic acid binding, Terpenoid_backbone_biosynthesis
| details | CFinderM001895 | phenylalanyl-tRNA aminoacylation, mitochondrial outer membrane, Aminoacyl-tRNA_biosynthesis tRNA aminoacylation, phenylalanine-tRNA ligase activity, tRNA binding,
| details |
4.Expression profilings |