1.Module annotation (GSEA enrichment result) Function Annotation | FDR | Gene Ontolog | phosphatase activity, | 0.000947613 | GO:0016791 | mRNA_surveillance_pathway | 0.021928485 | KEGG | dephosphorylation, | 0.025738575 | GO:0016311 | protein dephosphorylation, | 0.030729844 | GO:0006470 | protein ubiquitination, | 0.030729844 | GO:0016567 | protein tyrosine phosphatase activity, | 0.041301948 | GO:0004725 | protein tyrosine/serine/threonine phosphatase activity, | 0.041301948 | GO:0008138 | ubiquitin ligase complex, | 0.044732883 | GO:0000151 |
2.Module member annotation Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | PH01000253G0680 | plant U-box 17 | AT1G29340 (1.00E-143) | PH01000312G0990 | protein phosphatase 2A-4 | AT3G58500 (2.00E-172) | PH01000352G1050 | SPFH/Band 7/PHB domain-containing membrane-associated protein family | AT5G51570 (1.00E-127) | PH01000750G0220 | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | AT2G14110 (3.50E-68) | PH01000790G0590 | dual specificity protein phosphatase family protein | AT5G23720 (1.00E-180) | PH01001082G0140 | - | AT5G19300 (1.80E-94) |
3.Direct connection functional modules Module ID | Function Annotation | Overlap condition | CFinderM000906 | HSF Transcription_Regulator(from PlantTFDB) protein ADP-ribosylation, dephosphorylation, protein methylation, Base_excision_repair
| details | CFinderM000918 | GT48 GlycosylTransferases RLK-Pelle_RLCK-V (from iTAK) TKL-Pl-4 (from iTAK) microtubule cytoskeleton organization, (1->3)-beta-D-glucan biosynthetic process, cytokinesis 1,3-beta-D-glucan synthase complex, mRNA_surveillance_pathway
| details | CFinderM000959 | RLK-Pelle_PERK-1 (from iTAK)
| details | CFinderM001198 | RLK-Pelle_RLCK-VI (from iTAK) Oxidative_phosphorylation
| details | CFinderM001329 | Endocytosis selenium binding, dephosphorylation, protein tyrosine phosphatase activity, protein tyrosine/serine/threonine phosphatase activity, protein dephosphorylation, cell redox homeostasis,
| details | CFinderM001330 | selenium binding, dephosphorylation, protein tyrosine/serine/threonine phosphatase activity, protein tyrosine phosphatase activity, Endocytosis mRNA_surveillance_pathway phosphatase activity, protein dephosphorylation, cell redox homeostasis,
| details | CFinderM001331 | protein dephosphorylation, microtubule organizing center, spindle pole, dephosphorylation, microtubule cytoskeleton organization, C2H2 Transcription_Regulator(from PlantTFDB) isoprenoid biosynthetic process, selenium binding,
| details | CFinderM001399 | RNA_transport Phenylalanine,_tyrosine_and_tryptophan_biosynthesis 3-dehydroquinate synthase activity, Base_excision_repair
| details | CFinderM001400 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis 3-dehydroquinate synthase activity, ribonuclease H activity, DNA photolyase activity, cytokinesis aromatic amino acid family biosynthetic process, microtubule cytoskeleton organization, RNA metabolic process, DNA_replication microtubule binding, ubiquitin ligase complex, Ubiquitin_mediated_proteolysis protein ubiquitination, DNA repair,
| details | CFinderM001480 | Steroid_biosynthesis oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor, membrane,
| details | CFinderM001698 | Steroid_biosynthesis endodeoxyribonuclease activity, producing 5'-phosphomonoesters, sterol_24-C-methyltransferase_activity single-stranded DNA binding, protein tyrosine phosphatase activity, protein tyrosine/serine/threonine phosphatase activity, WRKY Transcription_Regulator(from PlantTFDB) dephosphorylation, steroid biosynthetic process,
| details | CFinderM001845 | protein complex, microtubule, PLATZ Transcription_Regulator(from iTAK) Phagosome mRNA_surveillance_pathway CAMK_CAMKL-CHK1 (from iTAK) protein polymerization, microtubule-based process, dephosphorylation,
| details | CFinderM001878 | isoprenoid biosynthetic process, mRNA_surveillance_pathway C2H2 Transcription_Regulator(from PlantTFDB) fatty-acyl-CoA binding,
| details | CFinderM001884 | single-stranded DNA binding, DNA_replication RNA processing,
| details | CFinderM001885 | Base_excision_repair NAD+ ADP-ribosyltransferase activity, GT29 GlycosylTransferases protein ADP-ribosylation, sialyltransferase activity, protein ubiquitination, protein glycosylation,
| details | CFinderM001886 | Steroid_biosynthesis ubiquitin ligase complex, sterol_24-C-methyltransferase_activity dephosphorylation, steroid biosynthetic process, mRNA_surveillance_pathway protein ubiquitination, protein dephosphorylation,
| details |
4.Expression profilings |