Consensus table for all supported data types in EasyGO

Data Type #Total 1st BLAST database 2nd BLAST database #annotated (total)
DEL-MAR 14K cDNA microarray probe (GPL1731) 15134 Chicken gene product (Ensembl) Vertebrate gene product (UniProt) 6929
Beijing Genomics Institute rice genome oligo set V1.0 (Operon) (GPL1829) 60727 Rice gene product (Gramene) Plant gene product (UniProt) 39535
Meyerowitz Lab Arabidopsis Operon Array Version 3 (GPL2810) 29329 -
-
27555
FHCRC chicken 13K microarray probe (GPL2863) 13798 Chicken gene product (Ensembl) Vertebrate gene product (UniProt) 7214
Agilent-012600 Arabidopsis 3 Oligo Microarray (GPL2871)
26236 -
-
25794
Agilent-012106 Rice Oligo Microarray (GPL892)
21495 Rice gene product (Gramene) Plant gene product (UniProt) 18472
Arabidopsis OAR27K array created from a set of 27K Operon 70 mer oligos (Yale University) (GPL988) 19152 -
-
18177
Arabidopsis gene locus (TAIR) 27029 -
-
26553
Arabidopsis Affymetrix ATH1 probeset 22746 Arabidopsis gene product (TAIR) -
21729
Arabidopsis Affymetrix Genome Array (8K) probeset 8247 Arabidopsis gene product (TAIR) -
7916
Barley Affymetrix Genome Array probeset 22795 Rice gene product (Gramene) Plant gene product (UniProt) 12507
Bovine Affymetrix Genome Array probeset 24016 Bovine gene product (Ensembl, UniProt, GenBank) Mammalian gene product (UniProt) 8183
Bovine Ensembl gene product 7701 -
-
7701
Bovine RefSeq gene product 5637 -
-
5637
Bovine UniProt gene product 9391 -
-
9391
Chicken Affymetrix Genome Array probeset 38439 Chicken gene product (Ensembl, UniProt, GenBank) Vertebrate gene product (UniProt) 20119
Chicken Ensembl gene product 5958 -
-
5958
Chicken RefSeq gene product 5529 -
-
5529
Chicken UniProt gene product 5082 -
-
5082
Tomato Affymetrix Genome Array probeset 30279 Arabidopsis gene product (TAIR) Plant gene product (UniProt) 16889
Cotton Affymetrix Genome Array probeset 24029 Arabidopsis gene product (TAIR) Plant gene product (UniProt) 16535
Maize Affymetrix Genome Array (GeneChip) probeset 17621 Rice gene product (Gramene) Plant gene product (UniProt) 11189
Medicago Affymetrix Genome Array probeset 61164 Arabidopsis gene product (TAIR), Bacteria gene product(UniProt)
Plant gene product (UniProt) 32063
Poplar Affymetrix Genome Array probeset 61313 Arabidopsis gene product (TAIR) Plant gene product (UniProt) 35719
Porcine Affymetrix Genome Array probeset 23999 Mammalian gene product (UniProt) Vertebrate gene product (UniProt) 5997
Rice Affymetrix Genome Array probeset (Gramene annotation) 57258 Rice gene product (Gramene) Plant gene product (UniProt) 42631
Rice Affymetrix Genome Array probeset (KOME annotation) 57258 Rice full-length cDNA (KOME) Plant gene product (UniProt) 36202
Rice (Indica/9311) gene product (BGI) 31237 Rice gene product (Gramene) Plant gene product (UniProt) 31237
Rice (Japonica) gene product (Gramene/UniProt) 61469 -
-
61469
Rice (Japonica) full-length cDNA (KOME) 27150 -
-
27150
Rice (Japonica) gene locus (TIGR) 24938 -
-
24925
Soybean Affymetrix Genome Array probeset 61035 Arabidopsis gene product (TAIR), fungi gene product (UniProt)
Plant gene product (UniProt) 22602
Sugar cane Affymetrix Genome Array probeset 8289 Rice gene product (Gramene) Plant gene product (UniProt) 4600
Tomato Affymetrix Genome Array probeset 10101 Arabidopsis gene product (TAIR) Plant gene product (UniProt) 5242
Tomato TOM1 cDNA microarray (Cornell) 7481 Arabidopsis gene product (TAIR) Plant gene product (UniProt) 7481
Wheat Affymetrix Genome Array probeset (rice Gramene annotated) 61179 Rice gene product (Gramene) Plant gene product (UniProt) 22942
Maize Oligonucleotide Array (TIGR & UA, GPL6438) 57452 Rice gene product (Gramene) Plant gene product (UniProt) 37087
Medicago gene models (predicted from BAC seq) 20784 Arabidopsis gene product (TAIR) Plant gene product (UniProt) 20784
Populus gene models 31780 Arabidopsis gene product (TAIR) Plant gene product (UniProt) 31780
Rice (Japonica) gene locus (eg: Os11g0702400) 22005 Rice gene product (Gramene) Plant gene product (UniProt) 22005
Wheat Affymetrix Genome Array (rice KOME cDNA annotated) 61179 Rice KOME full-length cDNA Plant gene product (UniProt) 23586
Soybean Affy GeneChip, Glycine Max only 37744 Rice KOME full-length cDNA Plant gene product (UniProt) 19569

  • #Total: total number of items in each data type (genes, probes, probesets, ...)
  • 1st BLAST database: sequence database used in first-round BLAST search for GO annotation
  • 2nd BLAST database: sequence database used in second-round BLAST search for GO annotation
  • #Annotated: number of items got GO annotation in this data type

This page last modified: 2008-04-23