Consensus table for all supported data types in EasyGO

Data Type #Total 1st BLAST database 2nd BLAST database #annotated
Arabidopsis locus (TAIR)31407--26541
Rice locus (Japonica, TIGR)56304Rice gene product (Gramene)-48615
Rice locus (Indica, BGI)49710Rice gene product (Gramene)-38380
Arabidopsis 22K ATH1 Genome Array22746Arabidopsis gene product (TAIR)-21824
Arabidopsis 8K Genome Array8274Arabidopsis gene product (TAIR)-7922
Rice Genome Array57194Rice gene product (Gramene)-44548
Barley Genome Array22782Rice gene product (Gramene)Plant gene product (UniProt)12691
Maize Genome Array17555Rice gene product (Gramene)Plant gene product (UniProt)11402
Sugar Cane Genome Array8224Rice gene product (Gramene)Plant gene product (UniProt)4715
Wheat Genome Array61115Rice gene product (Gramene)Plant gene product (UniProt)23486
Tomato Genome Array10038Arabidopsis gene product (TAIR)Plant gene product (UniProt)5138
Cotton Genome Array23977Arabidopsis gene product (TAIR)Plant gene product (UniProt)16266
Poplar Genome Array61251Arabidopsis gene product (TAIR)Plant gene product (UniProt)35023
Citrus Genome Array30219Arabidopsis gene product (TAIR)Plant gene product (UniProt)16429
Medicago Genome Array61103Arabidopsis gene product (TAIR)Plant gene product (UniProt)32387
Soybean Genome Array61035Arabidopsis gene product (TAIR)Plant gene product (UniProt)24958
Porcine Genome Array23935Mammalian gene product (UniProt)Vertebrate gene product (UniProt)6200
Bovine Genome Array24016Mammalian gene product (UniProt)Vertebrate gene product (UniProt)9410
Chicken Genome Array38382Chicken gene product (Ensembl)Vertebrate gene product (UniProt)20850
GPL1829 (rice Operon array, BGI)60727Rice gene product (Gramene)-41019
GPL2810 (Arabidopsis Operon array)29329--27550
GPL2871 (Arabidopsis Agilent array)26236--25789
GPL892 (rice Agilent array)21459Rice gene product (Gramene)-17728
GPL988 (Arabidopsis Operon array, Yale)19152--18174
GPL2863 (FHCRC chicken 13K spotted microarray)13870Chicken gene product (Ensembl)Vertebrate gene product (UniProt)7599
GPL1731 (DEL-MAR 14K spotted microarray)15134Chicken gene product (Ensembl)Vertebrate gene product (UniProt)7184

  • #Total: total number of items in each data type (genes, probes, probesets, ...)
  • 1st BLAST database: sequence database used in first-round BLAST search for GO annotation
  • 2nd BLAST database: sequence database used in second-round BLAST search for GO annotation
  • #Annotated: number of items got GO annotation in this data type

This page last modified: 2007-09-14