Consensus table for all supported data types in EasyGO

Data Type #Total 1st BLAST database 2nd BLAST database #annotated (total)
Arabidopsis locus (TAIR) 41439
 - - 27451
Rice locus (Japonica, TIGR) 54948
 Rice gene product (Gramene) Plant gene product (UniProt) 54948
Rice locus (Indica, BGI) 38861
 Rice gene product (Gramene) Plant gene product (UniProt) 30090
Arabidopsis 22K ATH1 Genome Array 22746 Arabidopsis gene product (TAIR) - 21830
Arabidopsis 8K Genome Array 8274 Arabidopsis gene product (TAIR) - 7922
Rice Genome Array (Gramene annotation) 57194 Rice gene product (Gramene) Plant gene product (UniProt) 41995
Barley Genome Array 22782 Rice gene product (Gramene) Plant gene product (UniProt) 12158
Maize Genome Array 17555 Rice gene product (Gramene) Plant gene product (UniProt) 10772
Sugar Cane Genome Array 8224 Rice gene product (Gramene) Plant gene product (UniProt) 4436
Wheat Genome Array 61115 Rice gene product (Gramene) Plant gene product (UniProt) 19371
Tomato Genome Array 10038 Arabidopsis gene product (TAIR) Plant gene product (UniProt) 5123
Cotton Genome Array 23977 Arabidopsis gene product (TAIR) Plant gene product (UniProt) 15987
Poplar Genome Array 61251 Arabidopsis gene product (TAIR) Plant gene product (UniProt) 34213
Citrus Genome Array 30219 Arabidopsis gene product (TAIR) Plant gene product (UniProt) 16042
Medicago Genome Array 61103 Arabidopsis gene product (TAIR) Plant gene product (UniProt) 30034
Soybean Genome Array 61035 Arabidopsis gene product (TAIR) Plant gene product (UniProt) 24186
Porcine Genome Array 23935 Mammalian gene product (UniProt) Vertebrate gene product (UniProt) 4300
Bovine Genome Array 24016 Bovine gene product (Ensembl, UniProt, GenBank) Mammalian gene product (UniProt) 7865
Chicken Genome Array 38382 Chicken gene product (Ensembl, UniProt, GenBank) Vertebrate gene product (UniProt) 19661
GPL1829 (rice Operon array, BGI) 60727 Rice gene product (Gramene) Plant gene product (UniProt) 39104
GPL2810 (Arabidopsis Operon array) 29329 - - 27613
GPL2871 (Arabidopsis Agilent array) 26236 - - 25808
GPL892 (rice Agilent array) 21459 Rice gene product (Gramene) Plant gene product (UniProt) 18160
GPL988 (Arabidopsis Operon array, Yale) 19152 - - 18218
GPL2863 (FHCRC chicken 13K spotted microarray) 13870 Chicken gene product (Ensembl) Vertebrate gene product (UniProt) 7036
GPL1731 (DEL-MAR 14K spotted microarray) 15134 Chicken gene product (Ensembl) Vertebrate gene product (UniProt) 6705
Tomato Tom1 cDNA microarray (Cornell) 13400 Arabidopsis gene product (TAIR) Rice gene product (Gramene) 7535
Rice Genome Array (KOME annotation) 57194 Rice full-length cDNA (KOME) Arabidopsis gene product (TAIR) 34375

  • #Total: total number of items in each data type (genes, probes, probesets, ...)
  • 1st BLAST database: sequence database used in first-round BLAST search for GO annotation
  • 2nd BLAST database: sequence database used in second-round BLAST search for GO annotation
  • #Annotated: number of items got GO annotation in this data type

This page last modified: 2008-01-13