Gene detail

Detail information of GWHGAAZE003353

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002278996.1	1.2487E-174	PREDICTED: peroxidase 4 [Vitis vinifera]
Swissprot	tr\|A7NY33\|PER4_VITVI	5E-161	Peroxidase 4 {ECO:0000250\|UniProtKB:Q42578} (Precursor)
trEMBL	tr\|F6HC56\|F6HC56_VITVI	5E-175	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB49814.1}
TAIR10	AT5G05340.1	1E-122	Peroxidase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	96431139	96433924	+
GWHAAZE00000001	mRNA	96431139	96433924	+
GWHAAZE00000001	exon	96431139	96431348	+
GWHAAZE00000001	exon	96432048	96432239	+
GWHAAZE00000001	exon	96432328	96432433	+
GWHAAZE00000001	exon	96433533	96433924	+
GWHAAZE00000001	CDS	96431139	96431348	+
GWHAAZE00000001	CDS	96432048	96432239	+
GWHAAZE00000001	CDS	96432328	96432433	+
GWHAAZE00000001	CDS	96433533	96433924	+

Transcript Sequence
>GWHTAAZE003359 ATGGCTTCTTCTTTTTCCATCTTGGCCATTGTGGCTCTCCTTGTGCCCTTTCTGGGAATTTCGTCAGCTCAACTTTCAACAAATTTTTACTCTAGCACTTGTCCTAAACTTTTTCCCACTGTGAAATCCACGGTGCAATCTGCCATAGCAAAAGAAGCCCGAATGGGCGCCTCTCTCCTTCGCTTGTTCTTCCATGACTGTTTTGTCAATGGATGCGATGGGTCAATCCTGCTAGATGATACATCATCCTTCACAGGAGAGAAGAGGGCAGCTCCTAATTTCAATTCTGCCAGGGGATTCGATGTTGTTGACAACATAAAGTCAGCGGTGGAAAATGTGTGCCCTGGCGTTGTCTCTTGTGCTGATATATTGGCCATTGCTTCTAGAGACTCCACTGCCATTCTTGGAGGTCCTAGTTGGAATGTAAAACTGGGAAGAAGAGATTCTAGGACCGCAAGCCAGGGTGCTGCAAACAATAGCATTCCTCGTCCAACTACAAACCTCAATGGATCTCACACAATTGGGCAAGCAAGGTGCACTAATTTCAGGGATCGTATATACAACGAAACCAATTTGGACAGTTCATTCGGTTCAACAAGGCGAGCTAACTGCCCAAGAGCCACCGGTTCCGGAGATAACAATTTGGCACCACTTGATCTACAATCTCCAACATCTTTCGACAACAACTACTACAAGAACCTTGTCAATCAAAGGGGTCTCCTCCACTCCGATCAACAGCTATTCAACGGTGGATCAACTGATTCAATCGTGAGAACTTATAGTAACAACCAAAACAACTTCAATTCTGATTTTGCTGCGGCCATGATCAAAATGGGTGACATTAGCCCGTTGACCGGATCTAATGGAGAGATAAGGAAGAACTGCAGGAAGCCAAATTAA

Network for GWHGAAZE003353

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00141.24	peroxidase	41	168	3.10E-41

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00430	E1.11.1.7	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0006979	biological_process	response to oxidative stress
GO:0055114	biological_process	oxidation-reduction process
GO:0042744	biological_process	hydrogen peroxide catabolic process
GO:0004601	molecular_function	peroxidase activity
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.974
	SRR3591706	second leaf	1.787
	SRR3591707	mature leaf	13.321
	SRR3591708	Shoot apex	6.643
	SRR3591709	Stem	1.740
	SRR3591710	White floral bud	27.213
	SRR3591711	White flower	31.619
	SRR3591712	Green floral bud	4.583
	SRR3591713	Yellow flower	98.066
SRP173429	SRR8316895	Juvenile bud stage	1.618
	SRR8316896	Juvenile bud stage	7.584
	SRR8316897	Juvenile bud stage	1.276
	SRR8316894	Third green stage	0.628
	SRR8316900	Third green stage	1.854
	SRR8316901	Third green stage	3.515
	SRR8316898	Complete white stage	14.759
	SRR8316899	Complete white stage	4.051
	SRR8316903	Complete white stage	10.286
	SRR8316902	Silver flowering stage	92.397
	SRR8316904	Silver flowering stage	96.019
	SRR8316905	Silver flowering stage	35.635
	SRR8316906	Gold flowering stage	220.782
	SRR8316907	Gold flowering stage	151.260
	SRR8316908	Gold flowering stage	415.451
SRP132670	SRR6706286	Control	8.946
	SRR6706287	Light intensity 50%	5.941
	SRR6706288	Light intensity 20%	2.664
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.599
	CNS0095593	Slightly white alabastrum(diploid) 2	2.333
	CNS0095594	Slightly white alabastrum(diploid) 3	10.702
	CNS0095595	Whole white alabastrum(diploid) 2	0.941
	CNS0095596	Whole white alabastrum(diploid) 3	0.236
	CNS0095597	Whole white alabastrum(diploid) 4	5.612
	CNS0095598	Silvery flower (diploied) 1	9.013
	CNS0095599	Silvery flower (diploied) 2	4.200
	CNS0095600	Silvery flower (diploied) 3	14.131
	CNS0095601	Golden flower (diploid) 1	44.197
	CNS0095602	Golden flower (diploid) 2	21.574
	CNS0095603	Golden flower (diploid) 3	19.628
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.663
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.698
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.098
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.625
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.374
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.290
	CNS0095610	Silvery flower (diploied) 1	36.341
	CNS0095611	Silvery flower (diploied) 2	8.040
	CNS0095612	Silvery flower (diploied) 3	27.101
	CNS0095613	Golden flower (tetraploid) 1	84.600
	CNS0095614	Golden flower (tetraploid) 2	90.812
	CNS0095615	Golden flower (tetraploid) 3	20.921
CRA001975	CRR073297	Stem 1	1.238
	CRR073298	Stem 2	1.347
	CRR073299	Stem 3	1.554
	CRR073300	Leaf 1	0.778
	CRR073301	Leaf 2	1.193
	CRR073302	Leaf 3	0.271
	CRR073303	Juvenile bud 1	0.448
	CRR073304	Juvenile bud 2	0.183
	CRR073305	Juvenile bud 3	1.017
	CRR073306	Third green 1	13.805
	CRR073307	Third green 2	21.103
	CRR073308	Third green 3	14.375
	CRR073309	Second white 1	14.941
	CRR073310	Second white 2	22.145
	CRR073311	Second white 3	21.532
	CRR073312	Silver flowering 1	71.026
	CRR073313	Silver flowering 2	68.083
	CRR073314	Silver flowering 3	38.546
	CRR073315	Gold flowering 1	1.038
	CRR073316	Gold flowering 2	2.360
	CRR073317	Gold flowering 3	11.114
	CRR073318	Tawny withering 1	84.100
	CRR073319	Tawny withering 2	72.641
	CRR073320	Tawny withering 3	46.714