LjaFGD


Co-expressed networks of Lonicera Japonica

The following network shows co-expression information of GWHGAAZE003353

Gene:
Yellow--query gene     Green--co-expressed genes     Grey--Genes without expression profile
Interaction line:
Pink--Genes positive co-expression relationship with target genes
Blue--Genes negative co-expression relationship with target genes
Grey--Genes without expression profile

show network details

Tissue preferential expression analysis

1.Nine Different Tissue:
youngest leaf  second leaf  mature leaf  Shoot apex  Stem  White floral bud  White flower  Green floral bud  Yellow flower  

   
Network Viewer With Differential Expressed Genes

1.Five stages of flowering:
Third green stage/Juvenile bud stage  
Complete white stage/Juvenile bud stage  
Silver flowering stage/Juvenile bud stage  
Gold flowering stage/Juvenile bud stage  
Complete white stage/Third green stage  
Silver flowering stage/Third green stage  
Gold flowering stage/Third green stage  
Silver flowering stage/Complete white stage  
Gold flowering stage/Complete white stage  
Gold flowering stage/Silver flowering stage  

2.Eight Different Stages of Development:
Leaf/stem
Juvenile_bud/stem
Third_green/stem
Second_white/stem
Silver_flowering/stem
Gold_flowering/stem
Tawny_withering/stem
Juvenile_bud/Leaf
Third_green/Leaf
Second_white/Leaf
Silver_flowering/Leaf
Gold_flowering/Leaf
Tawny_withering/Leaf
Third_green/Juvenile_bud
Second_white/Juvenile_bud
Silver_flowering/Juvenile_bud
Gold_flowering/Juvenile_bud
Tawny_withering/Juvenile_bud
Second_white/Third_green
Silver_flowering/Third_green
Gold_flowering/Third_green
Tawny_withering/Third_green
Silver_flowering/Second_white
Gold_flowering/Second_white
Tawny_withering/Second_white
Gold_flowering/Silver_flowering
Tawny_withering/Silver_flowering
Tawny_withering/Gold_flowering

3.Fresh buds or flowers at four different growth stages:
Whole_white_alabastrum_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Slightly_white_alabastrum(diploid)
Golden_flower_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Silvery_flower(diploid)
Whole_white_alabastrum_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Slightly_white_alabastrum(tetraploid)
Golden_flower_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Silvery_flower(tetraploid)



   

Co-expressed genes of GWHGAAZE003353

Co-expression relationship

IDOrtholog in ArabidopsisAnnotationPCCRelationship
GWHGAAZE003353AT5G05340.1Peroxidase superfamily protein1positive
GWHGAAZE022197AT1G24020.2MLP-like protein 4230.94positive
GWHGAAZE016175AT5G09360.1laccase 140.93positive
GWHGAAZE029754AT2G15220.1Plant basic secretory protein (BSP) family protein0.92positive
GWHGAAZE001847AT3G14690.1cytochrome P450, family 72, subfamily A, polypeptide 150.92positive
GWHGAAZE005461----0.92positive
GWHGAAZE001793AT2G29660.1zinc finger (C2H2 type) family protein0.92positive
GWHGAAZE025899AT5G25880.1NADP-malic enzyme 30.92positive
GWHGAAZE002853----0.91positive
GWHGAAZE000107AT1G24020.2MLP-like protein 4230.91positive
GWHGAAZE029862AT5G10530.1Concanavalin A-like lectin protein kinase family protein0.91positive
GWHGAAZE022195AT1G24020.2MLP-like protein 4230.91positive
GWHGAAZE006877AT5G44410.1FAD-binding Berberine family protein0.91positive
GWHGAAZE028933AT3G43740.1Leucine-rich repeat (LRR) family protein0.91positive
GWHGAAZE004635AT2G17480.1Seven transmembrane MLO family protein0.9positive
GWHGAAZE010621AT3G54420.1homolog of carrot EP3-3 chitinase0.9positive
GWHGAAZE027053AT1G17180.1glutathione S-transferase TAU 250.9positive
GWHGAAZE006885AT4G20820.1FAD-binding Berberine family protein0.9positive
GWHGAAZE016155AT4G09760.2Protein kinase superfamily protein0.9positive
GWHGAAZE031081AT5G38260.1Protein kinase superfamily protein0.9positive
GWHGAAZE022744AT2G03530.2ureide permease 20.9positive
GWHGAAZE000402AT2G29420.1glutathione S-transferase tau 70.9positive
GWHGAAZE024714AT1G54570.1Esterase/lipase/thioesterase family protein0.89positive
GWHGAAZE001815AT1G12740.1cytochrome P450, family 87, subfamily A, polypeptide 20.89positive
GWHGAAZE013310AT3G52970.1cytochrome P450, family 76, subfamily G, polypeptide 10.89positive
GWHGAAZE002529AT1G78380.1glutathione S-transferase TAU 190.89positive
GWHGAAZE016174AT5G09360.1laccase 140.89positive
GWHGAAZE016171AT5G09360.1laccase 140.89positive
GWHGAAZE001788AT3G26040.1HXXXD-type acyl-transferase family protein0.89positive
GWHGAAZE029854AT5G10530.1Concanavalin A-like lectin protein kinase family protein0.89positive
GWHGAAZE010691AT1G60690.1NAD(P)-linked oxidoreductase superfamily protein0.89positive
GWHGAAZE031156AT2G29110.1glutamate receptor 2.80.89positive
GWHGAAZE006823AT5G39130.1RmlC-like cupins superfamily protein0.89positive
GWHGAAZE024167AT1G78780.2pathogenesis-related family protein0.89positive
GWHGAAZE012261AT1G24020.2MLP-like protein 4230.88positive
GWHGAAZE004866----0.88positive
GWHGAAZE019981AT2G29120.1glutamate receptor 2.70.88positive
GWHGAAZE012875AT2G36380.1pleiotropic drug resistance 60.88positive
GWHGAAZE000164AT2G47730.1glutathione S-transferase phi 80.88positive
GWHGAAZE004236AT4G13180.1NAD(P)-binding Rossmann-fold superfamily protein0.88positive
GWHGAAZE000403AT2G29420.1glutathione S-transferase tau 70.87positive
GWHGAAZE002530AT1G78340.1glutathione S-transferase TAU 220.87positive
GWHGAAZE028676AT4G31980.1PPPDE thiol peptidase family protein;(source:Araport11)0.87positive
GWHGAAZE020115AT5G36110.1cytochrome P450, family 716, subfamily A, polypeptide 10.87positive
GWHGAAZE028346AT1G11330.1S-locus lectin protein kinase family protein0.87positive
GWHGAAZE001825AT1G12740.1cytochrome P450, family 87, subfamily A, polypeptide 20.87positive
GWHGAAZE009690AT3G23230.1Integrase-type DNA-binding superfamily protein0.86positive
GWHGAAZE001791AT3G26040.1HXXXD-type acyl-transferase family protein0.86positive
GWHGAAZE020004AT2G29120.1glutamate receptor 2.70.86positive
GWHGAAZE007802AT2G22590.1UDP-Glycosyltransferase superfamily protein0.86positive
GWHGAAZE006874AT1G30700.1FAD-binding Berberine family protein0.86positive
GWHGAAZE014172AT1G59590.1ZCF370.86positive
GWHGAAZE010623AT3G54420.1homolog of carrot EP3-3 chitinase0.86positive
GWHGAAZE006706AT1G78960.1lupeol synthase 20.86positive


Expression profiling, GSEA and motif analysis