Gene detail

Detail information of GWHGAAZE005782

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010654089.1	1.9877E-153	PREDICTED: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic isoform X1 [Vitis vinifera]
Swissprot	tr\|O82782\|HIS3_ARATH	1E-141	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic (Precursor)
trEMBL	tr\|D7TJ73\|D7TJ73_VITVI	7E-154	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI30299.3}
TAIR10	AT2G36230.1	2E-113	Aldolase-type TIM barrel family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	13760784	13768830	+
GWHAAZE00000002	mRNA	13760784	13768830	+
GWHAAZE00000002	exon	13760784	13760909	+
GWHAAZE00000002	exon	13764201	13764408	+
GWHAAZE00000002	exon	13765664	13765749	+
GWHAAZE00000002	exon	13767152	13767253	+
GWHAAZE00000002	exon	13767421	13767554	+
GWHAAZE00000002	exon	13768151	13768199	+
GWHAAZE00000002	exon	13768654	13768830	+
GWHAAZE00000002	CDS	13760784	13760909	+
GWHAAZE00000002	CDS	13764201	13764408	+
GWHAAZE00000002	CDS	13765664	13765749	+
GWHAAZE00000002	CDS	13767152	13767253	+
GWHAAZE00000002	CDS	13767421	13767554	+
GWHAAZE00000002	CDS	13768151	13768199	+
GWHAAZE00000002	CDS	13768654	13768830	+

Transcript Sequence
>GWHTAAZE005790 ATGCCAAAGAGAGAGGTAAGCGGAGAAAAGTTGAGATGGCGGCTGGAGAGAGGGGTGCGTGCAGCGGCGGATGTGTGGAGGCGTGGACTGTCGCTCAGTGTGCGTGATAGAGAAGTGAAGAGGAGGGGAAAGGTAAAGCAAATAGTTGGGTCCACTCTTCATGATTCAAGTGAGGGTGGTTCAACTCTTGTAACTAACTTCGAATCTGATAAATCAGCAGCAGAATACGCTGCCGTTTATAAAGAAGATGGACTACCAGGTGGTCATGTAATTATGCTTGGAGCTGATCCTTTGAGCAAATCCGCAGCCATTGAAGCATTACATGCTTATCCTGGTGGGTTGCAAGTTGGAGGCGGTATTCATTCAGGAAATGCTATGGGTTACATAAAGGAAGGAGCAAGCCATGTCATTATCACATCATATGTATTTAATAATGGACAAATGGACCTTGAGAGGCTCAAAGAGCTTGTTCATTTTATTGGAAAGCATAGGCTCGTTTTGGATCTCAGTTGCAGGAAGAAGGAGGGGAAATATGCGATTGTCACTGATAGATGGCAGAAGTTCAGTGATGTATATCTTGATGAGAAAGTATTGGATTTTCTTTCCTTCTATGCAGATGAATTTCTGGTCCATGGAGTTGATGTTGAGGGGAAAAAGCTAGGGATTGATGAAGAGCTTGTGGGATTGCTTGGTAAACACTCACCGATTCCAGTTACATATGCTGGTGGGGTGACGGAAATGGCTGATTTGGAGCGTATAAAAGTTGCGGGAATGGGACGCGTGGATGTTACAGTGGGTAGTGCTTTGGATATATTTGGTGGAAATTTGGCATACAAAGATATAGTAGCTTGGCACGGTCAGCAGACTACCTTGTCAGTCTAG

Network for GWHGAAZE005782

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00977.22	His_biosynth	69	269	7.90E-29

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01814	hisA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of amino acids	map01230
		Histidine metabolism	map00340

Gene Ontology

GO term	Ontology	Name
GO:0000105	biological_process	histidine biosynthetic process
GO:0003949	molecular_function	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.584
	SRR3591706	second leaf	17.995
	SRR3591707	mature leaf	15.095
	SRR3591708	Shoot apex	27.268
	SRR3591709	Stem	13.833
	SRR3591710	White floral bud	12.443
	SRR3591711	White flower	15.202
	SRR3591712	Green floral bud	21.384
	SRR3591713	Yellow flower	10.161
SRP173429	SRR8316895	Juvenile bud stage	16.426
	SRR8316896	Juvenile bud stage	18.470
	SRR8316897	Juvenile bud stage	10.497
	SRR8316894	Third green stage	8.339
	SRR8316900	Third green stage	21.119
	SRR8316901	Third green stage	21.291
	SRR8316898	Complete white stage	6.466
	SRR8316899	Complete white stage	25.501
	SRR8316903	Complete white stage	10.666
	SRR8316902	Silver flowering stage	7.418
	SRR8316904	Silver flowering stage	7.929
	SRR8316905	Silver flowering stage	3.851
	SRR8316906	Gold flowering stage	17.292
	SRR8316907	Gold flowering stage	14.695
	SRR8316908	Gold flowering stage	14.520
SRP132670	SRR6706286	Control	12.530
	SRR6706287	Light intensity 50%	13.283
	SRR6706288	Light intensity 20%	15.923
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	25.497
	CNS0095593	Slightly white alabastrum(diploid) 2	27.415
	CNS0095594	Slightly white alabastrum(diploid) 3	28.138
	CNS0095595	Whole white alabastrum(diploid) 2	19.136
	CNS0095596	Whole white alabastrum(diploid) 3	17.843
	CNS0095597	Whole white alabastrum(diploid) 4	20.311
	CNS0095598	Silvery flower (diploied) 1	21.216
	CNS0095599	Silvery flower (diploied) 2	20.047
	CNS0095600	Silvery flower (diploied) 3	12.567
	CNS0095601	Golden flower (diploid) 1	17.424
	CNS0095602	Golden flower (diploid) 2	9.731
	CNS0095603	Golden flower (diploid) 3	12.175
	CNS0095604	Slightly white alabastrum(tetraploid) 1	25.867
	CNS0095605	Slightly white alabastrum(tetraploid) 2	21.445
	CNS0095606	Slightly white alabastrum(tetraploid) 3	28.761
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.341
	CNS0095608	Whole white alabastrum(tetraploid) 2	15.344
	CNS0095609	Whole white alabastrum(tetraploid) 3	23.283
	CNS0095610	Silvery flower (diploied) 1	19.181
	CNS0095611	Silvery flower (diploied) 2	13.120
	CNS0095612	Silvery flower (diploied) 3	10.264
	CNS0095613	Golden flower (tetraploid) 1	13.353
	CNS0095614	Golden flower (tetraploid) 2	17.701
	CNS0095615	Golden flower (tetraploid) 3	9.483
CRA001975	CRR073297	Stem 1	15.823
	CRR073298	Stem 2	15.295
	CRR073299	Stem 3	11.930
	CRR073300	Leaf 1	17.665
	CRR073301	Leaf 2	20.024
	CRR073302	Leaf 3	11.023
	CRR073303	Juvenile bud 1	7.823
	CRR073304	Juvenile bud 2	5.644
	CRR073305	Juvenile bud 3	12.245
	CRR073306	Third green 1	2.161
	CRR073307	Third green 2	2.608
	CRR073308	Third green 3	2.250
	CRR073309	Second white 1	3.218
	CRR073310	Second white 2	3.192
	CRR073311	Second white 3	3.844
	CRR073312	Silver flowering 1	1.888
	CRR073313	Silver flowering 2	1.270
	CRR073314	Silver flowering 3	1.105
	CRR073315	Gold flowering 1	12.639
	CRR073316	Gold flowering 2	18.241
	CRR073317	Gold flowering 3	7.932
	CRR073318	Tawny withering 1	10.949
	CRR073319	Tawny withering 2	15.727
	CRR073320	Tawny withering 3	10.634