LjaFGD


Co-expressed networks of Lonicera Japonica

The following network shows co-expression information of GWHGAAZE005782

Gene:
Yellow--query gene     Green--co-expressed genes     Grey--Genes without expression profile
Interaction line:
Pink--Genes positive co-expression relationship with target genes
Blue--Genes negative co-expression relationship with target genes
Grey--Genes without expression profile

show network details

Tissue preferential expression analysis

1.Nine Different Tissue:
youngest leaf  second leaf  mature leaf  Shoot apex  Stem  White floral bud  White flower  Green floral bud  Yellow flower  

   
Network Viewer With Differential Expressed Genes

1.Five stages of flowering:
Third green stage/Juvenile bud stage  
Complete white stage/Juvenile bud stage  
Silver flowering stage/Juvenile bud stage  
Gold flowering stage/Juvenile bud stage  
Complete white stage/Third green stage  
Silver flowering stage/Third green stage  
Gold flowering stage/Third green stage  
Silver flowering stage/Complete white stage  
Gold flowering stage/Complete white stage  
Gold flowering stage/Silver flowering stage  

2.Eight Different Stages of Development:
Leaf/stem
Juvenile_bud/stem
Third_green/stem
Second_white/stem
Silver_flowering/stem
Gold_flowering/stem
Tawny_withering/stem
Juvenile_bud/Leaf
Third_green/Leaf
Second_white/Leaf
Silver_flowering/Leaf
Gold_flowering/Leaf
Tawny_withering/Leaf
Third_green/Juvenile_bud
Second_white/Juvenile_bud
Silver_flowering/Juvenile_bud
Gold_flowering/Juvenile_bud
Tawny_withering/Juvenile_bud
Second_white/Third_green
Silver_flowering/Third_green
Gold_flowering/Third_green
Tawny_withering/Third_green
Silver_flowering/Second_white
Gold_flowering/Second_white
Tawny_withering/Second_white
Gold_flowering/Silver_flowering
Tawny_withering/Silver_flowering
Tawny_withering/Gold_flowering

3.Fresh buds or flowers at four different growth stages:
Whole_white_alabastrum_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Slightly_white_alabastrum(diploid)
Golden_flower_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Silvery_flower(diploid)
Whole_white_alabastrum_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Slightly_white_alabastrum(tetraploid)
Golden_flower_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Silvery_flower(tetraploid)



   

Co-expressed genes of GWHGAAZE005782

Co-expression relationship

IDOrtholog in ArabidopsisAnnotationPCCRelationship
GWHGAAZE005782AT2G36230.1Aldolase-type TIM barrel family protein1positive
GWHGAAZE025859AT2G40700.1P-loop containing nucleoside triphosphate hydrolases superfamily protein0.92positive
GWHGAAZE004313AT3G47630.1translocator assembly/maintenance protein;(source:Araport11)0.9positive
GWHGAAZE016665AT1G20580.1Small nuclear ribonucleoprotein family protein0.9positive
GWHGAAZE017242AT1G72440.1CCAAT-binding factor0.9positive
GWHGAAZE014884AT4G36440.1G-protein coupled receptor;(source:Araport11)0.89positive
GWHGAAZE033337AT3G01800.1Ribosome recycling factor0.89positive
GWHGAAZE009001AT3G62470.1Pentatricopeptide repeat (PPR) superfamily protein0.89positive
GWHGAAZE003110AT4G15570.1P-loop containing nucleoside triphosphate hydrolases superfamily protein0.88positive
GWHGAAZE007142AT2G41460.1apurinic endonuclease-redox protein0.88positive
GWHGAAZE004814AT4G04880.1adenosine/AMP deaminase family protein0.88positive
GWHGAAZE031030AT3G13780.1SMAD/FHA domain-containing protein 0.88positive
GWHGAAZE029698AT4G14110.1COP9 signalosome, subunit CSN80.87positive
GWHGAAZE000736AT5G59460.1scarecrow-like transcription factor 11 (SCL11)0.87positive
GWHGAAZE000039AT4G01880.1methyltransferases0.87positive
GWHGAAZE002311AT2G38730.1Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein0.87positive
GWHGAAZE026067AT3G48930.1Nucleic acid-binding, OB-fold-like protein0.87positive
GWHGAAZE009380AT3G10110.1Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein0.86positive
GWHGAAZE024783AT5G18440.2Encodes NUFIP that directs assembly of C/D snoRNP (small nucleolar ribonucleoprotein).0.86positive
GWHGAAZE009895----0.86positive
GWHGAAZE005585AT3G53500.2RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain0.86positive
GWHGAAZE031350AT1G01920.1SET domain-containing protein0.86positive
GWHGAAZE025292AT1G70350.1hypothetical protein;(source:Araport11)0.86positive


Expression profiling, GSEA and motif analysis