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Detail information of GWHGAAZE006085
Functional Annotation
Database
Orthologs
E value
Annotation
Nr
XP_010660768.1
0
PREDICTED: lysine-specific demethylase 5B isoform X4 [Vitis vinifera]
trEMBL
tr|F6HUC9|F6HUC9_VITVI
0
Putative uncharacterized protein {ECO:0000313|EMBL:CCB58352.1}
TAIR10
AT1G63490.1
1E-93
transcription factor jumonji (jmjC) domain-containing protein
Location And Transcript Sequence
(JBrowse)
Scaffold
Type
Start
End
Strand
GWHAAZE00000002
gene
19099195
19110342
-
GWHAAZE00000002
mRNA
19099195
19110342
-
GWHAAZE00000002
exon
19110160
19110342
-
GWHAAZE00000002
exon
19110001
19110072
-
GWHAAZE00000002
exon
19109753
19109848
-
GWHAAZE00000002
exon
19109094
19109246
-
GWHAAZE00000002
exon
19108629
19108715
-
GWHAAZE00000002
exon
19108137
19108253
-
GWHAAZE00000002
exon
19107837
19108044
-
GWHAAZE00000002
exon
19107656
19107720
-
GWHAAZE00000002
exon
19107378
19107436
-
GWHAAZE00000002
exon
19107157
19107288
-
GWHAAZE00000002
exon
19106896
19107055
-
GWHAAZE00000002
exon
19106459
19106794
-
GWHAAZE00000002
exon
19104999
19105178
-
GWHAAZE00000002
exon
19104819
19104880
-
GWHAAZE00000002
exon
19103906
19103984
-
GWHAAZE00000002
exon
19103087
19103236
-
GWHAAZE00000002
exon
19102857
19102990
-
GWHAAZE00000002
exon
19102558
19102678
-
GWHAAZE00000002
exon
19102408
19102481
-
GWHAAZE00000002
exon
19101881
19102025
-
GWHAAZE00000002
exon
19101430
19101579
-
GWHAAZE00000002
exon
19100940
19101035
-
GWHAAZE00000002
exon
19100677
19100772
-
GWHAAZE00000002
exon
19099821
19100029
-
GWHAAZE00000002
exon
19099195
19099315
-
GWHAAZE00000002
CDS
19110160
19110342
-
GWHAAZE00000002
CDS
19110001
19110072
-
GWHAAZE00000002
CDS
19109753
19109848
-
GWHAAZE00000002
CDS
19109094
19109246
-
GWHAAZE00000002
CDS
19108629
19108715
-
GWHAAZE00000002
CDS
19108137
19108253
-
GWHAAZE00000002
CDS
19107837
19108044
-
GWHAAZE00000002
CDS
19107656
19107720
-
GWHAAZE00000002
CDS
19107378
19107436
-
GWHAAZE00000002
CDS
19107157
19107288
-
GWHAAZE00000002
CDS
19106896
19107055
-
GWHAAZE00000002
CDS
19106459
19106794
-
GWHAAZE00000002
CDS
19104999
19105178
-
GWHAAZE00000002
CDS
19104819
19104880
-
GWHAAZE00000002
CDS
19103906
19103984
-
GWHAAZE00000002
CDS
19103087
19103236
-
GWHAAZE00000002
CDS
19102857
19102990
-
GWHAAZE00000002
CDS
19102558
19102678
-
GWHAAZE00000002
CDS
19102408
19102481
-
GWHAAZE00000002
CDS
19101881
19102025
-
GWHAAZE00000002
CDS
19101430
19101579
-
GWHAAZE00000002
CDS
19100940
19101035
-
GWHAAZE00000002
CDS
19100677
19100772
-
GWHAAZE00000002
CDS
19099821
19100029
-
GWHAAZE00000002
CDS
19099195
19099315
-
Transcript Sequence
>GWHTAAZE006093 ATGGTTAAGAACTTGATTGAAGCTCAGAATTGGGCAGAAGGTGTAAGAGATTGTGTTTCTAAGGTGGAATTATGGTCATGCAATCCAAACCATGAGATTGAGAAAGTGCAGATGAAATATGTTAACAAATTGCTTAGTTATAATCCTGCACCTTGCAATGAGCCGGGGCATCTTAAATTGAAGGTTTATCAAGAAGAGGCAGGACTGTTGATTCAGGAAATTAATTCTGCTCTTTCAACATCTTCAATAGTTCTGCTTGCTGATTGGGAGATTTTGTACGCTAAAGCTTGTGACTCAGCCATAAGTGTAGAAGAAAGTGAGATATTATTACACAGGCTGTCTTTTGCGAAGAGGAGAGCCGTTGAGTGGAGGAGAAAACCACCCAAGACACGTCATGAGGAGAAGAAAATAGTGGAGAGTCGTCGACAGGAGGAGCTGGGCAACATCGACTGGACAAAACAGAGCAGAAATGGCGGATGGGAGAGACGATTCGAGCTAGTGAGGGTCTGGATGAACAATGTAAGGAAACTTATCTCAGAAACATCTCCTGCTACGGTTGAGGTTGATATGCTCTACAAGTTGAAGTTAGAGATTTCAGAGCTTCACATTCAACTCCCTGAAATTGGATTGCTTTTAAATTTTATAAAGGAAGTCGAATCATGCCAATCTCAGTGCAATGAGATGTTGGAAGGTCCTATTAACCAAAAGAAACTTGAAGTGCTGCTTCTAGAGTTGGATGGTTTTACTGTTAATATTCCAGAGTTGAGACTTTTGAGGCAATATCAGAGTGATGCTTTGTCCTGGGTTTCCCGCTTTAATGGTGTTGTAAAGAATATTCATGAATGGGAGGATCAAGAAAGTGTTGTTGACGAGTTAACTTCCATTAAAAAAGACGGAGCTTTGTTGAAAATTCAAGTTGATGAGTTCTCTCTTGTTGAGGTTGAGCTAAGGAAGGCTTGTTGCAGAGTAAAAGCTGTGAAGGCACTTCACTGTAAAATGTCTTTAGACTTCATCCGTGAAGTAATGATCGAGGCAACAATACTAAAGATTGAGAATGAGAAGTTATGTGCTCATATTTCTCGAGTACTTGCTGATGCTATGTCTTGGGAAGAAAGAGCAAAACACATTCTTGCAAGTGAGGATCAAATGGCTGAATTTGAGGATATTATAAGGAATTCTGAGGAGCTGTTTGTCATTCTACCTTCTCTTAACGATGTTACGGACGCAGTGTCGATGGCTAAAACCTGGCTCAATAAGTCTAAGCCTTTTTTAGTTTCTCATTTGTCTGTGGCACCCGTCTCAAGTTCTTTGCTCAAAGTTGAGGATCTGAAGGAGTTGGTGTCACAATCCAAGCTGTTGAAGATATGTTTGGAAGAACGATATATGCTTCAATCAGTTCTAGAAAAATGCATCCAATGGGAGCATGCTGCTTTCTCCTTACTGGAAAACGTGGAGTGCCTACTAAACACATCTGATATTAGTGATGGAAGTCCCTGTGGTCTTATTTCAGAAATTGAACGTCAAGTTGACACGTTGGAATCTGTTACAAAAGCTGGTTTCTCTCTTCGTTTTGAGTTTCTTGTCATTCCAAAGCTTCAAGATGCTCGTTCTACCCTCCAATGGTGCTTTAAGGCCCTTTCTTTCCGTGCTGTCTCTCCAGCACTAGAGGAAGTTGATGCGTTGTTGGAGGTTGGCAGGCATCTTCCTATTACATATGCATCCTGCCCTTTGTTGAGCTCATTGATTGATGGGGTGAACTGGCTCAAGAAAGCCCTAGAGATTCCTGTGCCTTGCAATCTTACGGGATTTAAGTTGAGTGAAGCTGAAGAAGTTCTTGGGCAATACAAGGCTCTCCATGTCTCCTTCCCAACTATTGTTGGCCAGCTTGTAGATGCTATCAAGAGACATAATTCGTGGTTGGAACAAGTACAACATTTTTTCAGCCTCAAGTCCGTGGATAGATCGTGGCTTTTATTGCGCCAGCTCAAGGAACTTGGGAGCAATGATGCCTTTAATTGCTCAAAATTAGACACTGTTTTATCGGAAGCAAGAAAGGTTGAGCAGTGGAAGATGCGGTGCCTTGACATTCTTGGGGCTACAGATGGAGAAGAAAATGCCCTGCTCAATGCTCTATTACAGATAAAAAATAATCTTGATAGATCGTTGAACTTGTACGAGAAGTTCAAGTGCTGCAAACCAAGAAGTTTATGCATATGTTGCTCCAGTGACATTAAGGATGAGGGATTTGCGACTTGTTCTTTGTGCAAGGACTGCTATCATTTGCGGTGCATAGGACCAACGAAATCCGATAAAAATGGTGCAAGAATATTTGTTTGCCCTTGTTGCCGCTTAATGGAGGGTGGAAAAAACTTTAGAAATGGAAGCAGTCTACTGAAAACTTCAGGGAAGCGTCCTGAATTAAACATTTTCATCAGGCTTTTATCTGATTCCGAGGATTTGTGTGTTTGGATTGAGGAAAGAAGTATACTTGTCCAAGTTGTTGAGAAGGCTCTTTCATTTAAAGATTGCTTAACGGAAATATTGGATTTTGCACTGGCTCATCTTGATGAGGACATCGGAATAGTGACTAGAAAACTGTCTATTGCCTTGAAGGCAGTAGAAGTGGCAGGTGTGTACGATCATCATTGTAACTGCAAATTTGAGCAGGCGCTAGCAAGAAATTCTTGGAGACTCAAAACCCGTAAACTATTAGAAGGTCCACAAAAGACCGCAATCCAACAAATTGAGCGGCATTTGAAAGAGGGACTGGCTACAAGTATACCTCCAGAAGATCACTTCAGGATGAAACTTACAGAATCAAAACACATTGGCCTGCAATGGGCAGATAGGGCCAAAAAGGTTTCAGTGGATTCTGGAGCACTTGACTTGGATAAAGTTTTTGAACTTATTGCGGAGGGTGAAAATTTGGCAGTTCACTTTGAAAAGGAACTTAAGTTATTAAGAGATCGAAGTATGCTTTACTGCATCTGTCGGAGGCCCTACGATCAGAGAGCAATGATTGCCTGTGATAAATGTGATGAATGGTATCACTTTGATTGCATTAATTTATCTTCGCCTCCAAAGATTTACATCTGCCCTGCTTGTAAGTTTGATACAGAAGCAGATTTGGCTCCACCTCCATCAACAACTCAGGAGAGGCAAGCGTCAAATGGCAAATGTGGTGAGCCTCAAACACCATCTCCATGTAGAACGGAACTGAGGAGAAGAACCGAAAAGCCAAAAAAGACGAGTACAACTACAAAGCGGAAGACACCAGAAACTACA
Network for GWHGAAZE006085
Network category
Network
Top300 PCC genelist
Coexpression Positive
Network
Top300 PCC genelist
Coexpression Negative
Network
Top300 PCC genelist
Functional Module
Module ID
Function Annotation
Protein Structure
Pfam accession
Pfam name
Alignment start
Alignment end
E-value
PF08429.12
PLU-1
179
480
6.10E-21
PF08429.12
PLU-1
436
692
1.70E-09
PF00628.30
PHD
994
1037
2.20E-08
Protein Sequence
>GWHPAAZE006089 MVKNLIEAQNWAEGVRDCVSKVELWSCNPNHEIEKVQMKYVNKLLSYNPAPCNEPGHLKLKVYQEEAGLLIQEINSALSTSSIVLLADWEILYAKACDSAISVEESEILLHRLSFAKRRAVEWRRKPPKTRHEEKKIVESRRQEELGNIDWTKQSRNGGWERRFELVRVWMNNVRKLISETSPATVEVDMLYKLKLEISELHIQLPEIGLLLNFIKEVESCQSQCNEMLEGPINQKKLEVLLLELDGFTVNIPELRLLRQYQSDALSWVSRFNGVVKNIHEWEDQESVVDELTSIKKDGALLKIQVDEFSLVEVELRKACCRVKAVKALHCKMSLDFIREVMIEATILKIENEKLCAHISRVLADAMSWEERAKHILASEDQMAEFEDIIRNSEELFVILPSLNDVTDAVSMAKTWLNKSKPFLVSHLSVAPVSSSLLKVEDLKELVSQSKLLKICLEERYMLQSVLEKCIQWEHAAFSLLENVECLLNTSDISDGSPCGLISEIERQVDTLESVTKAGFSLRFEFLVIPKLQDARSTLQWCFKALSFRAVSPALEEVDALLEVGRHLPITYASCPLLSSLIDGVNWLKKALEIPVPCNLTGFKLSEAEEVLGQYKALHVSFPTIVGQLVDAIKRHNSWLEQVQHFFSLKSVDRSWLLLRQLKELGSNDAFNCSKLDTVLSEARKVEQWKMRCLDILGATDGEENALLNALLQIKNNLDRSLNLYEKFKCCKPRSLCICCSSDIKDEGFATCSLCKDCYHLRCIGPTKSDKNGARIFVCPCCRLMEGGKNFRNGSSLLKTSGKRPELNIFIRLLSDSEDLCVWIEERSILVQVVEKALSFKDCLTEILDFALAHLDEDIGIVTRKLSIALKAVEVAGVYDHHCNCKFEQALARNSWRLKTRKLLEGPQKTAIQQIERHLKEGLATSIPPEDHFRMKLTESKHIGLQWADRAKKVSVDSGALDLDKVFELIAEGENLAVHFEKELKLLRDRSMLYCICRRPYDQRAMIACDKCDEWYHFDCINLSSPPKIYICPACKFDTEADLAPPPSTTQERQASNGKCGEPQTPSPCRTELRRRTEKPKKTSTTTKRKTPETT
Gene family
Gene family
subfamily
Transcription Factors Family
PHD
KEGG pathway
KO
Enzyme
pathway
mapID
--
--
--
--
Gene Ontology
GO term
Ontology
Name
Expression pattern
Expression pattern detail
SRP
Sample
Description
TPM
SRP075780
SRR3591705
youngest leaf
20.245
SRR3591706
second leaf
17.329
SRR3591707
mature leaf
15.799
SRR3591708
Shoot apex
18.174
SRR3591709
Stem
21.626
SRR3591710
White floral bud
27.362
SRR3591711
White flower
29.781
SRR3591712
Green floral bud
27.891
SRR3591713
Yellow flower
25.927
SRP173429
SRR8316895
Juvenile bud stage
14.048
SRR8316896
Juvenile bud stage
21.351
SRR8316897
Juvenile bud stage
8.689
SRR8316894
Third green stage
9.250
SRR8316900
Third green stage
19.140
SRR8316901
Third green stage
22.787
SRR8316898
Complete white stage
4.926
SRR8316899
Complete white stage
16.532
SRR8316903
Complete white stage
14.813
SRR8316902
Silver flowering stage
10.334
SRR8316904
Silver flowering stage
17.648
SRR8316905
Silver flowering stage
6.996
SRR8316906
Gold flowering stage
24.513
SRR8316907
Gold flowering stage
24.865
SRR8316908
Gold flowering stage
25.380
SRP132670
SRR6706286
Control
7.389
SRR6706287
Light intensity 50%
11.186
SRR6706288
Light intensity 20%
11.724
CNP0000432
CNS0095592
Slightly white alabastrum(diploid) 1
13.561
CNS0095593
Slightly white alabastrum(diploid) 2
13.105
CNS0095594
Slightly white alabastrum(diploid) 3
12.352
CNS0095595
Whole white alabastrum(diploid) 2
13.471
CNS0095596
Whole white alabastrum(diploid) 3
11.603
CNS0095597
Whole white alabastrum(diploid) 4
12.485
CNS0095598
Silvery flower (diploied) 1
15.850
CNS0095599
Silvery flower (diploied) 2
11.842
CNS0095600
Silvery flower (diploied) 3
17.623
CNS0095601
Golden flower (diploid) 1
14.293
CNS0095602
Golden flower (diploid) 2
19.193
CNS0095603
Golden flower (diploid) 3
17.630
CNS0095604
Slightly white alabastrum(tetraploid) 1
15.631
CNS0095605
Slightly white alabastrum(tetraploid) 2
13.052
CNS0095606
Slightly white alabastrum(tetraploid) 3
27.646
CNS0095607
Whole white alabastrum(tetraploid) 1
11.938
CNS0095608
Whole white alabastrum(tetraploid) 2
9.798
CNS0095609
Whole white alabastrum(tetraploid) 3
20.589
CNS0095610
Silvery flower (diploied) 1
26.213
CNS0095611
Silvery flower (diploied) 2
20.516
CNS0095612
Silvery flower (diploied) 3
27.803
CNS0095613
Golden flower (tetraploid) 1
20.981
CNS0095614
Golden flower (tetraploid) 2
22.487
CNS0095615
Golden flower (tetraploid) 3
24.286
CRA001975
CRR073297
Stem 1
14.465
CRR073298
Stem 2
13.082
CRR073299
Stem 3
6.715
CRR073300
Leaf 1
13.093
CRR073301
Leaf 2
12.427
CRR073302
Leaf 3
6.798
CRR073303
Juvenile bud 1
7.778
CRR073304
Juvenile bud 2
4.803
CRR073305
Juvenile bud 3
8.192
CRR073306
Third green 1
3.545
CRR073307
Third green 2
2.455
CRR073308
Third green 3
4.207
CRR073309
Second white 1
3.858
CRR073310
Second white 2
9.461
CRR073311
Second white 3
9.232
CRR073312
Silver flowering 1
6.045
CRR073313
Silver flowering 2
6.109
CRR073314
Silver flowering 3
5.592
CRR073315
Gold flowering 1
4.087
CRR073316
Gold flowering 2
6.277
CRR073317
Gold flowering 3
1.516
CRR073318
Tawny withering 1
7.263
CRR073319
Tawny withering 2
8.888
CRR073320
Tawny withering 3
7.039