Detail information of GWHGAAZE006085


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010660768.10PREDICTED: lysine-specific demethylase 5B isoform X4 [Vitis vinifera]
trEMBLtr|F6HUC9|F6HUC9_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB58352.1}
TAIR10AT1G63490.11E-93transcription factor jumonji (jmjC) domain-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene1909919519110342-
GWHAAZE00000002mRNA1909919519110342-
GWHAAZE00000002exon1911016019110342-
GWHAAZE00000002exon1911000119110072-
GWHAAZE00000002exon1910975319109848-
GWHAAZE00000002exon1910909419109246-
GWHAAZE00000002exon1910862919108715-
GWHAAZE00000002exon1910813719108253-
GWHAAZE00000002exon1910783719108044-
GWHAAZE00000002exon1910765619107720-
GWHAAZE00000002exon1910737819107436-
GWHAAZE00000002exon1910715719107288-
GWHAAZE00000002exon1910689619107055-
GWHAAZE00000002exon1910645919106794-
GWHAAZE00000002exon1910499919105178-
GWHAAZE00000002exon1910481919104880-
GWHAAZE00000002exon1910390619103984-
GWHAAZE00000002exon1910308719103236-
GWHAAZE00000002exon1910285719102990-
GWHAAZE00000002exon1910255819102678-
GWHAAZE00000002exon1910240819102481-
GWHAAZE00000002exon1910188119102025-
GWHAAZE00000002exon1910143019101579-
GWHAAZE00000002exon1910094019101035-
GWHAAZE00000002exon1910067719100772-
GWHAAZE00000002exon1909982119100029-
GWHAAZE00000002exon1909919519099315-
GWHAAZE00000002CDS1911016019110342-
GWHAAZE00000002CDS1911000119110072-
GWHAAZE00000002CDS1910975319109848-
GWHAAZE00000002CDS1910909419109246-
GWHAAZE00000002CDS1910862919108715-
GWHAAZE00000002CDS1910813719108253-
GWHAAZE00000002CDS1910783719108044-
GWHAAZE00000002CDS1910765619107720-
GWHAAZE00000002CDS1910737819107436-
GWHAAZE00000002CDS1910715719107288-
GWHAAZE00000002CDS1910689619107055-
GWHAAZE00000002CDS1910645919106794-
GWHAAZE00000002CDS1910499919105178-
GWHAAZE00000002CDS1910481919104880-
GWHAAZE00000002CDS1910390619103984-
GWHAAZE00000002CDS1910308719103236-
GWHAAZE00000002CDS1910285719102990-
GWHAAZE00000002CDS1910255819102678-
GWHAAZE00000002CDS1910240819102481-
GWHAAZE00000002CDS1910188119102025-
GWHAAZE00000002CDS1910143019101579-
GWHAAZE00000002CDS1910094019101035-
GWHAAZE00000002CDS1910067719100772-
GWHAAZE00000002CDS1909982119100029-
GWHAAZE00000002CDS1909919519099315-
Transcript Sequence

Network for GWHGAAZE006085

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08429.12PLU-11794806.10E-21
PF08429.12PLU-14366921.70E-09
PF00628.30PHD99410372.20E-08
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyPHD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf20.245
SRR3591706second leaf17.329
SRR3591707mature leaf15.799
SRR3591708Shoot apex18.174
SRR3591709Stem21.626
SRR3591710White floral bud27.362
SRR3591711White flower29.781
SRR3591712Green floral bud27.891
SRR3591713Yellow flower25.927
SRP173429 SRR8316895Juvenile bud stage 14.048
SRR8316896Juvenile bud stage 21.351
SRR8316897Juvenile bud stage 8.689
SRR8316894Third green stage 9.250
SRR8316900Third green stage 19.140
SRR8316901Third green stage 22.787
SRR8316898Complete white stage 4.926
SRR8316899Complete white stage 16.532
SRR8316903Complete white stage 14.813
SRR8316902Silver flowering stage10.334
SRR8316904Silver flowering stage17.648
SRR8316905Silver flowering stage6.996
SRR8316906Gold flowering stage 24.513
SRR8316907Gold flowering stage 24.865
SRR8316908Gold flowering stage 25.380
SRP132670SRR6706286Control7.389
SRR6706287Light intensity 50%11.186
SRR6706288Light intensity 20%11.724
CNP0000432CNS0095592Slightly white alabastrum(diploid) 113.561
CNS0095593Slightly white alabastrum(diploid) 213.105
CNS0095594Slightly white alabastrum(diploid) 312.352
CNS0095595Whole white alabastrum(diploid) 213.471
CNS0095596Whole white alabastrum(diploid) 311.603
CNS0095597Whole white alabastrum(diploid) 412.485
CNS0095598Silvery flower (diploied) 115.850
CNS0095599Silvery flower (diploied) 211.842
CNS0095600Silvery flower (diploied) 317.623
CNS0095601Golden flower (diploid) 114.293
CNS0095602Golden flower (diploid) 219.193
CNS0095603Golden flower (diploid) 317.630
CNS0095604Slightly white alabastrum(tetraploid) 115.631
CNS0095605Slightly white alabastrum(tetraploid) 213.052
CNS0095606Slightly white alabastrum(tetraploid) 327.646
CNS0095607Whole white alabastrum(tetraploid) 111.938
CNS0095608Whole white alabastrum(tetraploid) 29.798
CNS0095609Whole white alabastrum(tetraploid) 320.589
CNS0095610Silvery flower (diploied) 126.213
CNS0095611Silvery flower (diploied) 220.516
CNS0095612Silvery flower (diploied) 327.803
CNS0095613Golden flower (tetraploid) 120.981
CNS0095614Golden flower (tetraploid) 222.487
CNS0095615Golden flower (tetraploid) 324.286
CRA001975CRR073297Stem 114.465
CRR073298Stem 213.082
CRR073299Stem 36.715
CRR073300Leaf 113.093
CRR073301Leaf 212.427
CRR073302Leaf 36.798
CRR073303Juvenile bud 17.778
CRR073304Juvenile bud 24.803
CRR073305Juvenile bud 38.192
CRR073306Third green 13.545
CRR073307Third green 22.455
CRR073308Third green 34.207
CRR073309Second white 13.858
CRR073310Second white 29.461
CRR073311Second white 39.232
CRR073312Silver flowering 16.045
CRR073313Silver flowering 26.109
CRR073314Silver flowering 35.592
CRR073315Gold flowering 14.087
CRR073316Gold flowering 26.277
CRR073317Gold flowering 31.516
CRR073318Tawny withering 17.263
CRR073319Tawny withering 28.888
CRR073320Tawny withering 37.039