LjaFGD


Co-expressed networks of Lonicera Japonica

The following network shows co-expression information of GWHGAAZE006085

Gene:
Yellow--query gene     Green--co-expressed genes     Grey--Genes without expression profile
Interaction line:
Pink--Genes positive co-expression relationship with target genes
Blue--Genes negative co-expression relationship with target genes
Grey--Genes without expression profile

show network details

Tissue preferential expression analysis

1.Nine Different Tissue:
youngest leaf  second leaf  mature leaf  Shoot apex  Stem  White floral bud  White flower  Green floral bud  Yellow flower  

   
Network Viewer With Differential Expressed Genes

1.Five stages of flowering:
Third green stage/Juvenile bud stage  
Complete white stage/Juvenile bud stage  
Silver flowering stage/Juvenile bud stage  
Gold flowering stage/Juvenile bud stage  
Complete white stage/Third green stage  
Silver flowering stage/Third green stage  
Gold flowering stage/Third green stage  
Silver flowering stage/Complete white stage  
Gold flowering stage/Complete white stage  
Gold flowering stage/Silver flowering stage  

2.Eight Different Stages of Development:
Leaf/stem
Juvenile_bud/stem
Third_green/stem
Second_white/stem
Silver_flowering/stem
Gold_flowering/stem
Tawny_withering/stem
Juvenile_bud/Leaf
Third_green/Leaf
Second_white/Leaf
Silver_flowering/Leaf
Gold_flowering/Leaf
Tawny_withering/Leaf
Third_green/Juvenile_bud
Second_white/Juvenile_bud
Silver_flowering/Juvenile_bud
Gold_flowering/Juvenile_bud
Tawny_withering/Juvenile_bud
Second_white/Third_green
Silver_flowering/Third_green
Gold_flowering/Third_green
Tawny_withering/Third_green
Silver_flowering/Second_white
Gold_flowering/Second_white
Tawny_withering/Second_white
Gold_flowering/Silver_flowering
Tawny_withering/Silver_flowering
Tawny_withering/Gold_flowering

3.Fresh buds or flowers at four different growth stages:
Whole_white_alabastrum_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Slightly_white_alabastrum(diploid)
Golden_flower_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Silvery_flower(diploid)
Whole_white_alabastrum_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Slightly_white_alabastrum(tetraploid)
Golden_flower_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Silvery_flower(tetraploid)



   

Co-expressed genes of GWHGAAZE006085

Co-expression relationship

IDOrtholog in ArabidopsisAnnotationPCCRelationship
GWHGAAZE006085AT1G63490.1transcription factor jumonji (jmjC) domain-containing protein1positive
GWHGAAZE019461AT1G59760.1RNA helicase, ATP-dependent, SK12/DOB1 protein0.92positive
GWHGAAZE022156AT4G15880.1Cysteine proteinases superfamily protein0.91positive
GWHGAAZE003776----0.91positive
GWHGAAZE002314AT3G15920.1Phox (PX) domain-containing protein0.91positive
GWHGAAZE031378AT4G00660.2RNAhelicase-like 80.9positive
GWHGAAZE026420AT5G07630.1lipid transporters0.9positive
GWHGAAZE033271AT3G27670.1ARM repeat superfamily protein0.9positive
GWHGAAZE007353AT1G66730.1DNA LIGASE 60.9positive
GWHGAAZE032692AT3G28430.1Encodes a peripheral membrane protein localized at the Golgi apparatus that is involved in membrane trafficking, vacuole development and in flavonoid accumulation in the seed coat. Mutant seed color is pale brown.0.89positive
GWHGAAZE008173AT1G21200.1sequence-specific DNA binding transcription factors0.89positive
GWHGAAZE026085AT2G25170.1chromatin remodeling factor CHD3 (PICKLE)0.89positive
GWHGAAZE003065AT5G20660.1Zn-dependent exopeptidases superfamily protein0.89positive
GWHGAAZE019102AT1G79810.1Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein0.89positive
GWHGAAZE009908AT4G02400.1U3 ribonucleoprotein (Utp) family protein0.89positive
GWHGAAZE004687AT4G04920.2sensitive to freezing 60.88positive
GWHGAAZE030977AT5G48120.1ARM repeat superfamily protein0.88positive
GWHGAAZE030314AT3G17740.1hypothetical protein;(source:Araport11)0.88positive
GWHGAAZE009840AT2G47980.1sister-chromatid cohesion protein 30.88positive
GWHGAAZE017760AT1G32490.1RNA helicase family protein0.88positive
GWHGAAZE017766AT5G07890.3myosin heavy chain-related0.88positive
GWHGAAZE009950AT2G47410.1WD40/YVTN repeat-like-containing domain;Bromodomain0.88positive
GWHGAAZE031070AT4G17620.2glycine-rich protein0.88positive
GWHGAAZE032117AT3G09850.1D111/G-patch domain-containing protein0.88positive
GWHGAAZE032907AT3G62010.2metal ion-binding protein;(source:Araport11)0.88positive
GWHGAAZE031782AT3G07530.1integrator complex subunit;(source:Araport11)0.88positive
GWHGAAZE025276AT3G28030.15'-3' exonuclease family protein0.88positive
GWHGAAZE022921AT1G60490.1vacuolar protein sorting 340.88positive
GWHGAAZE004872AT1G62330.1O-fucosyltransferase family protein0.88positive
GWHGAAZE023116AT1G28120.1ubiquitin thioesterase otubain-like protein;(source:Araport11)0.88positive
GWHGAAZE002468AT1G55930.1CBS domain-containing protein / transporter associated domain-containing protein0.88positive
GWHGAAZE017194AT1G16800.1P-loop containing nucleoside triphosphate hydrolases superfamily protein0.88positive
GWHGAAZE024911AT4G00660.2RNAhelicase-like 80.87positive
GWHGAAZE021200AT4G30990.1ARM repeat superfamily protein0.87positive
GWHGAAZE012322AT3G17205.2ubiquitin protein ligase 60.87positive
GWHGAAZE004354AT1G30610.2pentatricopeptide (PPR) repeat-containing protein0.87positive
GWHGAAZE022927AT5G58003.1C-terminal domain phosphatase-like 40.87positive
GWHGAAZE014003AT1G45150.1alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase;(source:Araport11)0.87positive
GWHGAAZE031988AT2G18850.2SET domain-containing protein0.87positive
GWHGAAZE026565AT5G05570.2transducin family protein / WD-40 repeat family protein0.87positive
GWHGAAZE006504AT1G50440.3RING/FYVE/PHD zinc finger superfamily protein0.87positive
GWHGAAZE025951AT5G11500.2coiled-coil protein;(source:Araport11)0.87positive
GWHGAAZE033039AT3G14400.1ubiquitin-specific protease 250.87positive
GWHGAAZE025950AT5G11500.1coiled-coil protein;(source:Araport11)0.87positive
GWHGAAZE032476AT5G06830.1hypothetical protein;(source:Araport11)0.86positive
GWHGAAZE014606AT4G14590.1embryo defective 27390.86positive
GWHGAAZE033596AT5G58100.1transmembrane protein;(source:Araport11)0.86positive
GWHGAAZE030949AT1G15240.2Phox-associated domain;Phox-like;Sorting nexin, C-terminal0.86positive
GWHGAAZE031829AT3G07300.2NagB/RpiA/CoA transferase-like superfamily protein0.86positive
GWHGAAZE018628AT2G14680.3myosin heavy chain-related0.86positive
GWHGAAZE013585AT1G10520.1DNA polymerase lambda (POLL)0.86positive
GWHGAAZE005031AT1G79190.1ARM repeat superfamily protein0.86positive
GWHGAAZE017841AT5G62760.1P-loop containing nucleoside triphosphate hydrolases superfamily protein0.86positive
GWHGAAZE014798----0.86positive
GWHGAAZE019537AT3G57170.1N-acetylglucosaminyl transferase component family protein / Gpi1 family protein0.86positive
GWHGAAZE007525AT2G31530.1SecY protein transport family protein0.86positive
GWHGAAZE018567AT3G19420.1PTEN 20.86positive
GWHGAAZE005225AT1G08600.4P-loop containing nucleoside triphosphate hydrolases superfamily protein0.86positive
GWHGAAZE030710AT3G48470.1embryo defective 24230.86positive
GWHGAAZE016757AT5G08500.1Transmembrane CLPTM1 family protein0.86positive
GWHGAAZE008570AT5G22010.1replication factor C10.86positive
GWHGAAZE003888AT2G44710.1RNA-binding (RRM/RBD/RNP motifs) family protein0.86positive
GWHGAAZE002864AT1G50730.1hypothetical protein;(source:Araport11)0.86positive


Expression profiling, GSEA and motif analysis